CX296593

Overview
NameCX296593
Unique NameCX296593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.047e-31
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.903e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.015e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.015e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.015e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.015e-31
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.623e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CX296593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_CANFA3.099e-3195.71Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.099e-3195.71Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN3.099e-3195.71Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY4.047e-3194.29Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EIMBO6.903e-3194.29Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB9.015e-3194.29Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU9.015e-3194.29Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU9.015e-3194.29Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI9.015e-3194.29Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN2.623e-3092.86Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146E05SK FerrChloL1 Citrus clementina cDNA clone C05146E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296593 ID=CX296593; Name=CX296593; organism=Citrus clementina; type=EST; length=525bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTTTAAACTAGAGTTTTTTATTC
AAAAGCATAACTCGTTCAACAAACAACAACATATAAAAACAAAAGACCAT
ATTATCAATTATAACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGA
CCATCTTGAACAGAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCA
GAAACCACCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCT
GAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCG
AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT
GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCG
TCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGCCACCCCTCAGACGC
AAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGT
CCTTCCATCCTCCAGCTGCTTGCCA
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