CX296597

Overview
NameCX296597
Unique NameCX296597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
[Close]
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:   10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
The following BLAST results are available for this feature:
BLAST of CX296597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_SPOFR5.058e-1565.45Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP5.058e-1565.45Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_RAT5.058e-1565.45Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT5.058e-1565.45Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY5.058e-1565.45Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY5.058e-1565.45Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG5.058e-1565.45Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR5.058e-1565.45Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA5.058e-1565.45Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE5.058e-1565.45Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146E11SK FerrChloL1 Citrus clementina cDNA clone C05146E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296597 ID=CX296597; Name=CX296597; organism=Citrus clementina; type=EST; length=406bp
ATTCGGGACGAGGGGAAAACCCTCACATTGGACGTTGAGAGTTCTGACAC
CCTTGACAATGAGGAGGCTCCCACCCAGGATAAGGAGGGGATTCCCCCAG
ACCAACAAATGGTGATCTTTGCTGGTCATGATGTTGAGGATGTACGGACT
CTTGCTGATTACAACCTCGAGAACGAGCCCCCTCTGCATCTTGGGCTCCG
TCCCCCTGGAGGTGTCTGAGTCTGATCATCTGGGGGTGGGCGTGTCTTAT
GTGCTCCGGCTTGTCGTGAATAGTGTTAGCTTGCTATTGGAGAAATGTCT
TAAATGACTATTTGAAGCTCATTTTGGATGAGGTAGATGAACTCTGCTTC
TAAGACATTGATATGGTCCCACTAACGTCCCCTTGTATTATCTAAGAATC
TTTTTC
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