CX296597

Overview
NameCX296597
Unique NameCX296597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.592e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            GKT+ L+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +E+ RTL+DYN++ E
Sbjct:   10 GKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKE 64          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.538e-14
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   19 TLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            T+TL+VE SDT++N +A  QDKEGIPPDQQ +IFAG  +ED RTL+DYN++ E
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 53          
BLAST of CX296597 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   13 GKTLTLDVESSDTLDNEEAPTQDKEGIPPDQQMVIFAGHDVEDVRTLADYNLENE 177
            G T+ L+VE SDT++N +A  QDKEGIPPDQQ +IFA   +E+ RTL+DYN++ E
Sbjct:   10 GTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKE 64          
The following BLAST results are available for this feature:
BLAST of CX296597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_LEIMA5.592e-1461.82Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LUMTE9.538e-1464.15Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_LEITA1.799e-1258.18Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC05146E11SK FerrChloL1 Citrus clementina cDNA clone C05146E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296597 ID=CX296597; Name=CX296597; organism=Citrus clementina; type=EST; length=406bp
ATTCGGGACGAGGGGAAAACCCTCACATTGGACGTTGAGAGTTCTGACAC
CCTTGACAATGAGGAGGCTCCCACCCAGGATAAGGAGGGGATTCCCCCAG
ACCAACAAATGGTGATCTTTGCTGGTCATGATGTTGAGGATGTACGGACT
CTTGCTGATTACAACCTCGAGAACGAGCCCCCTCTGCATCTTGGGCTCCG
TCCCCCTGGAGGTGTCTGAGTCTGATCATCTGGGGGTGGGCGTGTCTTAT
GTGCTCCGGCTTGTCGTGAATAGTGTTAGCTTGCTATTGGAGAAATGTCT
TAAATGACTATTTGAAGCTCATTTTGGATGAGGTAGATGAACTCTGCTTC
TAAGACATTGATATGGTCCCACTAACGTCCCCTTGTATTATCTAAGAATC
TTTTTC
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