CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP_BUCAI (ABC transporter ATP-binding protein uup OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=uup PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.243e-20
Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    7 EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            +F   ++++    +  I+ G+K A+IG NGCGKSTL+K+I+G  KP+ G++ +G+  +  +YF+QN++  L+ +K+++E +    E    + R   I   L    FK + L   V  LSGGE  RL   +  +KPS +L+LDEPTN LD+
Sbjct:  296 DFLVNNKIIIKNFSSIIQHGDKLALIGDNGCGKSTLIKIIIGENKPQKGKIYIGK-GLKISYFDQNRS-FLNPNKSIIENIDYGKEKILLNSREQHIIRYLKNFLFKPNQLKSLVKTLSGGECNRLLLAQLFLKPSNVLILDEPTNDLDL 443          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YHES_ECOLI (Uncharacterized ABC transporter ATP-binding protein yheS OS=Escherichia coli (strain K12) GN=yheS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            GY DR++ +   L +  G +  ++G NG GKSTL+KL+ G   P  GE+ L +  +   YF Q+Q E L  D++ ++ +A  A       ++  LG   F+ D +  +    SGGEKARL     + +   LL+LDEPTNHLD+  ++
Sbjct:  321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YHES_ECO57 (Uncharacterized ABC transporter ATP-binding protein yheS OS=Escherichia coli O157:H7 GN=yheS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            GY DR++ +   L +  G +  ++G NG GKSTL+KL+ G   P  GE+ L +  +   YF Q+Q E L  D++ ++ +A  A       ++  LG   F+ D +  +    SGGEKARL     + +   LL+LDEPTNHLD+  ++
Sbjct:  321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YJJK_SHIFL (Uncharacterized ABC transporter ATP-binding protein yjjK OS=Shigella flexneri GN=yjjK PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y DRLL +  + +I +G    IIGPNG GKSTL ++I G E+P  G + LGE   L +       +++D  KTV E V+   +  +I +     +  +GR NFK     ++V  LSGGE+ RL   K +     +L+LDEPTN LDI
Sbjct:  333 YGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDI 477          

HSP 2 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 1
Query:   25 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV----------------LLGEHNVLPNYFEQNQAEALDLDKTVLETVAE-----------AAEDWRIDDI------KGLLGRCNFKADML-----DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            R +    +L+   G K  ++G NG GKSTLL+++ G++K   GE                 L  EH V  +  E+  +E ++  K + E  A            AAE  R+++I        L  +    AD L     D K++ LSGGE+ R+A C+ +++   +L+LDEPTNHLD  S
Sbjct:   19 RHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRES-IEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 197          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YJJK_ECOLI (Uncharacterized ABC transporter ATP-binding protein yjjK OS=Escherichia coli (strain K12) GN=yjjK PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y DRLL +  + +I +G    IIGPNG GKSTL ++I G E+P  G + LGE   L +       +++D  KTV E V+   +  +I +     +  +GR NFK     ++V  LSGGE+ RL   K +     +L+LDEPTN LDI
Sbjct:  333 YGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDI 477          

HSP 2 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 1
Query:   25 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV----------------LLGEHNVLPNYFEQNQAEALDLDKTVLETVAE-----------AAEDWRIDDI------KGLLGRCNFKADML-----DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            R +    +L+   G K  ++G NG GKSTLL+++ G++K   GE                 L  EH V  +  E+  +E ++  K + E  A            AAE  R+++I        L  +    AD L     D K++ LSGGE+ R+A C+ +++   +L+LDEPTNHLD  S
Sbjct:   19 RHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRES-IEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 197          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YJJK_ECO57 (Uncharacterized ABC transporter ATP-binding protein yjjK OS=Escherichia coli O157:H7 GN=yjjK PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 58/147 (39.46%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y DRLL +  + +I +G    IIGPNG GKSTL ++I G E+P  G + LGE   L +       +++D  KTV E V+   +  +I +     +  +GR NFK     ++V  LSGGE+ RL   K +     +L+LDEPTN LDI
Sbjct:  333 YGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDI 477          

HSP 2 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 56/180 (31.11%), Postives = 86/180 (47.78%), Query Frame = 1
Query:   25 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV----------------LLGEHNVLPNYFEQNQAEALDLDKTVLETVAE-----------AAEDWRIDDI------KGLLGRCNFKADML-----DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            R +    +L+   G K  ++G NG GKSTLL+++ G++K   GE                 L  EH V  +  E+  +E ++  K + E  A            AAE  R+++I        L  +    AD L     D K++ LSGGE+ R+A C+ +++   +L+LDEPTNHLD  S
Sbjct:   19 RHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRES-IEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 197          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF3_RAT (ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 51/151 (33.77%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 EFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +F Y+ + ++F+R +++ +   +  ++G NG GKST+LKL+MG   P  G +     N+   YF Q+  E LDL+ + +E +A        ++ +  LGR     ++  R V+ LSGG+K+R+AF +  +      +LDEPTNHLD+ + E
Sbjct:  498 DFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLAPVRG-IRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIE 647          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y1252_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1252 OS=Haemophilus influenzae GN=HI1252 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.425e-19
Identity = 55/147 (37.41%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y DR L +  + +I +G    IIG NG GKSTL +++ G E+P  G V +GE  VL +       +++D  KTV E V+   +   I +     +  +GR NFK     ++V  LSGGE+ RL   K + +   +L+LDEPTN LD+
Sbjct:  334 YGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLSGQEQPDSGSVTMGETVVLASV--DQFRDSMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRGGNVLLLDEPTNDLDV 478          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF3_MOUSE (ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.231e-18
Identity = 51/151 (33.77%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    7 EFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +F Y+ +  +F+R +++ +   +  ++G NG GKST+LKL+MG   P  G +     N+   YF Q+  E LDL+ + +E +A        ++ +  LGR     ++  R V+ LSGG+K+R+AF +  +      +LDEPTNHLD+ + E
Sbjct:  498 DFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRG-IRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIE 647          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF3_PONAB (ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.100e-18
Identity = 50/151 (33.11%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 EFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +F Y+ + ++F+R +++ +   +  ++G NG GKST+LKL++G   P  G +     N+   YF Q+  E LDL+ + +E +A        ++ +  LGR     ++  R V+ LSGG+K+R+AF +  +      +LDEPTNHLD+ + E
Sbjct:  498 DFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRG-IRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIE 647          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
UUP_BUCAI2.243e-2037.33ABC transporter ATP-binding protein uup OS=Buchner... [more]
YHES_ECOLI2.930e-2035.81Uncharacterized ABC transporter ATP-binding protei... [more]
YHES_ECO572.930e-2035.81Uncharacterized ABC transporter ATP-binding protei... [more]
YJJK_SHIFL8.525e-2039.46Uncharacterized ABC transporter ATP-binding protei... [more]
YJJK_ECOLI8.525e-2039.46Uncharacterized ABC transporter ATP-binding protei... [more]
YJJK_ECO578.525e-2039.46Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF3_RAT7.217e-1933.77ATP-binding cassette sub-family F member 3 OS=Ratt... [more]
Y1252_HAEIN9.425e-1937.41Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF3_MOUSE1.231e-1833.77ATP-binding cassette sub-family F member 3 OS=Mus ... [more]
ABCF3_PONAB2.100e-1833.11ATP-binding cassette sub-family F member 3 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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