CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_OENOB (Spermidine/putrescine import ATP-binding protein potA OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=potA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE--------ALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +  +  + +L IE G+   ++GP+G GKST+L LI G  +P GG++L+   NV  N    NQ +        AL  +  V + VA     +     +ID +   + +     D  DR++S +SGG++ R+A  + +     +L+LDEP + LD
Sbjct:   19 YGETKVLKKVDLEIEEGKFYTLLGPSGSGKSTILSLISGRLQPTGGDILIEGKNV--NSLPSNQRKVNTVFQNYALFPNMNVYDNVAFGPSIKGFSKKKIDQLVKSMLKLVKLDDFSDREISEISGGQQQRVAIARALANQPKVLLLDEPLSALD 171          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_LEGPA (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Paris) GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-------------EHNVLPNY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +  + N  +L +  GE   ++GP+GCGK+TLL+LI G E+P  GE+ +               H V  +Y         +N A AL   KT  + + E     R+ D   L+     + ++L +R V  LSGG++ R+A  + ++    +L+LDEP + LD
Sbjct:   15 YGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQCVNQLPPQKRDVHTVFQSYALFPHLSVFENVAFALRCKKTSNQEIKE-----RVFDALKLV-----QLELLAERNVKQLSGGQQQRVAIARAIINRPQVLLLDEPLSSLD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_AGGAC (Spermidine/putrescine import ATP-binding protein potA OS=Aggregatibacter actinomycetemcomitans GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 49/155 (31.61%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y    +    NLTI  GE   I+GP+GCGK+T+L+L+ GLE+   G ++L   ++     E+       Q+ AL    T+ E VA      ++ +       ++ L  R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YGSNTIIKDFNLTINNGEFLTILGPSGCGKTTVLRLLAGLEELDSGNIILDGEDITNVPAEKRHVNTVFQSYALFPHMTIFENVAFGLRMQKVPEAEIKPRVLEAL--RMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI_BURS3 (Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain 383) GN=nodI PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 55/159 (34.59%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE------HNVLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + D+L+ N  + T++ GE   ++GPNG GK+T LK+++GL  P  G + L GE       +         Q + LD D TV E +          A+AA       +K LL     + +  D KV  LSGG K RL   + +V    +LVLDEPT  LD
Sbjct:   15 FGDKLVVNGLSFTVQAGECYGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGMSAQAAHAL----VKPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 53/161 (32.92%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLG------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D+ + N  + T+  GE   ++GPNG GKST+ ++I+G+  P  GE+ +LG               V+P      Q + LDL+ TV E +      +R+        I  LL     + +  D +VS LSGG K RL   + ++    LL+LDEPT  LD
Sbjct:   46 YGDKPVINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPGTGEITVLGVPVPSRARLARMRIGVVP------QFDNLDLEFTVRENLLVFGRYFRMSTREIEAVIPSLLEFARLE-NKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 199          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: HMUV_RHOP5 (Hemin import ATP-binding protein hmuV OS=Rhodopseudomonas palustris (strain BisA53) GN=hmuV PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPNYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCKFMVKPST--------LLVLDEPTNHLDI 444
            L +R +L IE GE  AI+GPNG GKSTLL+++ G  +P  G V L +   H+  P      +A      ++    TV E V   A D      + L+     +   A+  DRK+  LSGGE+ R  F + +V+           LL+LDEPT+ LD+
Sbjct:   19 LVDRISLRIEGGELIAIVGPNGAGKSTLLRMLSGDLRPSRGAVRLQQRAVHSYAPRELASRRAMLSQHVSVSFPFTVDEIVQMGAGDRSRAATQSLVDAALHEVGLAEFRDRKLPTLSGGEQQRAHFARVLVQLGCGEAEHGPGLLLLDEPTSSLDL 175          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 1
Query:    7 EFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADM---LDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 453
            +FGY  D L+ N   LTIERG+ TA++G +G GK+TL  LI     P  G++L+   +V   YFE N           +    + ++ + +A     A +  I ++  L     F  +M    D K+      LSGG++ R+A  + +++   +L+LDE T+ LD  S+
Sbjct:  370 DFGYTADNLVLNNITLTIERGKTTALVGASGAGKTTLADLIPRFYDPTEGQILVDGLDV--QYFEINSLRRKMAVVSQDTFIFNTSIRDNIAYGTSGASEAEIREVARLANALQFIEEMPEGFDTKLGDRGVRLSGGQRQRIAIARALLRDPEILILDEATSALDSVSE 536          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_ECOLI (Fe(3+) ions import ATP-binding protein fbpC OS=Escherichia coli (strain K12) GN=fbpC PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.937e-12
Identity = 43/148 (29.05%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRID--DIKGLLGRCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + +  NLTI +G+   ++GP+GCGK+T+L+L+ GLEKP  G++ +   +V     +Q       Q+ AL    ++ E V    +   +   ++K  +       D+    DR V  +SGG++ R+A  + ++    +L+ DEP ++LD
Sbjct:   21 VIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPRAELKARVKEALAMVDLEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_RICTY (Zinc import ATP-binding protein znuC OS=Rickettsia typhi GN=znuC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 39/140 (27.86%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   37 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            ++ +  +++   T +IGPNG GK+T+++LI+GLEKP  GE+++ +  +   Y  Q      D+  TV + +   A +    +IK +    + +  + ++++S LSGG+  ++     ++    L++LDEP   LD+ S++
Sbjct:   22 SKVSFIVKKNNITTLIGPNGAGKTTIVRLILGLEKPTSGEIII-DRKLKIGYVPQKFGLTTDIPITVKKFLDLLAPNHFNKNIKEISSFIDLEY-IKEQEISKLSGGQFQKVVLACSIINNPDLMILDEPLQSLDVTSQQ 159          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: WTPC_ARCFU (Molybdate/tungstate import ATP-binding protein wtpC OS=Archaeoglobus fulgidus GN=wtpC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 53/159 (33.33%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   19 EDRLLFNRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTV-------------LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 453
            E RL   R N+  E G +   ++GP G GKS  L+LI G+ KP  GEV L   ++ P   E+     +  D  +             L  V     D R+ ++   LG     A +LDRK + LSGGE+ R+A  + +V    LL+LDEP + +D+ +K
Sbjct:    8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
POTA_OENOB2.937e-1230.97Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LEGPA2.937e-1230.67Spermidine/putrescine import ATP-binding protein p... [more]
POTA_AGGAC2.937e-1231.61Spermidine/putrescine import ATP-binding protein p... [more]
NODI_BURS32.937e-1234.59Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI1_RHIME2.937e-1232.92Nod factor export ATP-binding protein I OS=Rhizobi... [more]
HMUV_RHOP52.937e-1235.03Hemin import ATP-binding protein hmuV OS=Rhodopseu... [more]
HEPA_ANASP2.937e-1230.77Heterocyst differentiation ATP-binding protein hep... [more]
FBPC_ECOLI2.937e-1229.05Fe(3+) ions import ATP-binding protein fbpC OS=Esc... [more]
ZNUC_RICTY3.835e-1227.86Zinc import ATP-binding protein znuC OS=Rickettsia... [more]
WTPC_ARCFU3.835e-1233.33Molybdate/tungstate import ATP-binding protein wtp... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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