CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UGPC2_RHIEC (sn-glycerol-3-phosphate import ATP-binding protein ugpC 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ugpC2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN--------QAEALDLDKTVLET---------VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +L I+ GE   I+GP+GCGKSTLL++I GLE+  GGE+ +    V  N  E          Q  AL    TV E          VA+     RI ++   L    F    LDR+ + LSGG++ R+A  + M++   + + DEP ++LD
Sbjct:   23 DLEIQSGEFIVILGPSGCGKSTLLRMIAGLEEITGGEIAIDGRVV--NQMEPRERGCAMVFQNYALYPHMTVAENIGYALKVAGVAKTERSRRIAEVAKALSLEPF----LDRRPAALSGGQRQRVAMGRAMIREPKVFLFDEPLSNLD 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB1_PSEAE (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Pseudomonas aeruginosa GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + +R +    +L +  G+  AI+G +GCGKSTLL+L+ GL++P  GE+L G   +     +     Q   L   K V++ V      DWR   ++ L  R    A+  +   + LSGG+K R+A  + ++    LL+LDEP   LD
Sbjct:   30 FGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKALQAL--RAVGLAERANEWPAALSGGQKQRVALARALIHEPRLLLLDEPLGALD 173          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAN (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain N315) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 48/158 (30.38%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VL  +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLTIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAM (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 48/158 (30.38%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VL  +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLTIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: DDPF_ECOLI (Probable D,D-dipeptide transport ATP-binding protein ddpF OS=Escherichia coli (strain K12) GN=ddpF PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   37 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE-------AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            N  +L I RGE   I+G +GCGKSTL +L+MG+ +P  G+ +      +     Q+   +L+    V   + E       ++E  R    + L  +   + + LDR     SGG++ R+A  + +     ++VLDEPT+ LDI
Sbjct:   33 NGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CYSA_ANASP (Sulfate/thiosulfate import ATP-binding protein cysA OS=Anabaena sp. (strain PCC 7120) GN=cysA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   37 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ NL I+ G+  A++GP+G GKSTLL+LI GLEKP  G ++L G+     +  E+N     Q  AL    TV + +A   E  +    K + GR     +++      DR  S LSGG++ R+A  + +    ++L+LDEP   LD
Sbjct:   19 DQVNLEIQSGKLVALLGPSGSGKSTLLRLIAGLEKPDDGRIILTGKDATNQSVQERNIGFVFQHYALFKHLTVRQNIAFGLEIRKAPANK-VKGRVEQLLELVQLSGLGDRYPSQLSGGQRQRVALARALAVEPSVLLLDEPFGALD 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CBIO2_ENTFA (Cobalt import ATP-binding protein cbiO 2 OS=Enterococcus faecalis GN=cbiO2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.835e-12
Identity = 53/161 (32.92%), Postives = 75/161 (46.58%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ-------------AEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +E R LF+  NLTI+ G  TAI+G  G GKSTLL+ +  L KP  G+V +GE  + P    +N               EA   ++TV   +A   +++ + D       K +L         L      LSGG+  R+A    +     +LVLDEPT  LD
Sbjct:   18 FEQRALFD-INLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPTKGQVTIGERVITPETDNKNLKPIRKKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEEAKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_YERE8 (Zinc import ATP-binding protein znuC OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=znuC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            +  R + N  +L++  G    ++GPNG GKSTL+++++GL  P  G + + E  +   Y  Q     L LD T+  TV+         R  DI   L R +  A +LD+ +  LSGGE  R+   + ++    LLVLDEPT  +D+
Sbjct:   14 FGSRRVLNDISLSLRPGRILTLLGPNGAGKSTLVRVVLGLIAPTSGSI-IREPGLRIGYVPQK----LHLDTTLPLTVSRFMRLKPGVRKADILPALKRVH-AAHLLDQPMQKLSGGENQRVLLARALLNRPQLLVLDEPTQGVDV 153          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YVFR_BACSU (Uncharacterized ABC transporter ATP-binding protein yvfR OS=Bacillus subtilis GN=yvfR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLE---TVAEAAEDWRID-----DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 453
            ++ +   N  + +IE+GE  AI+GPNG GK+T++ +I+GL KP  GE+ L   N +P+  +  +   + L +  +     V E  E +R        +K L+       + L  +   LSGG+K RL+F   +     LL+LDEPT  +D  S+
Sbjct:   15 FQRKTAVNNISFSIEKGEIAAILGPNGAGKTTVVSMILGLLKPSEGEIKL--FNRVPDDQQVREKIGVMLQEVSVMPGLKVDEILELFRSYYPNPLSMKELVSLTALTKEDLKTRAEKLSGGQKRRLSFALALAGNPELLILDEPTVGMDTSSR 166          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y3745_BRUSU (Putative ATP-binding protein BRA0745 OS=Brucella suis GN=BRA0745 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 50/152 (32.89%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLP----NYFEQNQAEALDLDKTVLETVA--------EAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + +R +L I  GE   ++GP+GCGKSTLL+++ GLE   GG++++G    N LP    N     Q+ AL    T  E +         +AAE   ++D    +L   ++    LDR    LSGG++ R+A  + +V+  ++ + DEP ++LD
Sbjct:   18 VLDRIDLEIHSGEFLVLVGPSGCGKSTLLRMVAGLEPISGGDLVIGGERANELPPQKRNIAMVFQSYALFPHMTARENIGFGPRIRGEKAAETAAKVDHAASILNLHSY----LDRYPRQLSGGQRQRVAMGRAIVREPSVFLFDEPLSNLD 165          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
UGPC2_RHIEC3.835e-1234.90sn-glycerol-3-phosphate import ATP-binding protein... [more]
SSUB1_PSEAE3.835e-1232.88Aliphatic sulfonates import ATP-binding protein ss... [more]
OPPF2_STAAN3.835e-1230.38Putative oligopeptide transport ATP-binding protei... [more]
OPPF2_STAAM3.835e-1230.38Putative oligopeptide transport ATP-binding protei... [more]
DDPF_ECOLI3.835e-1230.77Probable D,D-dipeptide transport ATP-binding prote... [more]
CYSA_ANASP3.835e-1235.37Sulfate/thiosulfate import ATP-binding protein cys... [more]
CBIO2_ENTFA3.835e-1232.92Cobalt import ATP-binding protein cbiO 2 OS=Entero... [more]
ZNUC_YERE85.009e-1233.56Zinc import ATP-binding protein znuC OS=Yersinia e... [more]
YVFR_BACSU5.009e-1231.82Uncharacterized ABC transporter ATP-binding protei... [more]
Y3745_BRUSU5.009e-1232.89Putative ATP-binding protein BRA0745 OS=Brucella s... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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