CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: RBSA2_RHILO (Ribose import ATP-binding protein rbsA 2 OS=Rhizobium loti GN=rbsA2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   37 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF------------EQNQAEALDLDKTVLETVAEAAEDWR-----------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 453
            N  +L + RGE   I G  G G+S L K I+G ++   G + +    VLPN              E  + EAL L +++L+  A    D             ++ +  L  + + KA  LD +VS LSGG + ++   +++ +   LL+LDEPT  +DI +K
Sbjct:  273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAK 434          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_PASMU (Spermidine/putrescine import ATP-binding protein potA OS=Pasteurella multocida GN=potA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 48/153 (31.37%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D+ +    NLTI  GE   I+GP+GCGK+T+L+L+ GLE+   G ++L   ++     EQ       Q+ AL    T+ E VA      ++  ++IK  +        + +    K + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YGDKTIIENFNLTINNGEFLTILGPSGCGKTTVLRLLAGLEELDSGNIILDGEDITHVPAEQRHVNTVFQSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEYAYSKPAQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_MARAV (Spermidine/putrescine import ATP-binding protein potA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=potA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ + + +  +L I  GE   ++GP+GCGK+TLL+++ G E P  G + LG         EH  L   F+            N A  L ++K   + + E  ED         L     + D   RK   LSGG++ R+A  + +VK   +L+LDEP + LD
Sbjct:   15 FDGKKVLDSLDLDIFDGEFITLLGPSGCGKTTLLRMMAGFEHPDDGTIALGDQDLTHTPPEHRPLNTVFQNYALFPHMSVFDNVAYGLKMEKRPKQEIRERVED--------ALAMVQLE-DFARRKPHQLSGGQQQRVAIARAVVKRPKVLLLDEPLSALD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_LEGPH (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=potA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-------------EHNVLPNY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +  + N  +L +  GE   ++GP+GCGK+TLL+LI G E+P  GE+ +               H V  +Y         +N A AL   KT  + + +     R+ D   L+        + +R V  LSGG++ R+A  + ++    +L+LDEP + LD
Sbjct:   15 YGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQCVNQLPPQKRDVHTVFQSYALFPHLSVFENVAFALRCKKTPNQEIRK-----RVFDALKLVQ----LESLAERNVKQLSGGQQQRVAIARAIINRPQVLLLDEPLSSLD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_LACBA (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=potA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 54/159 (33.96%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPNYFEQN---QAEALDLDKTVLETVA-----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D  + +  NLT+E G+   ++GP+GCGK+T+L+ I G      G++L      ++V  N    N   Q  AL    TV E VA           E AE  R++    L+      AD  DR +S LSGG++ R+A  + +V    +L+LDEP + LD
Sbjct:   15 YADNTILSNINLTLESGKFYTLLGPSGCGKTTILRTIAGFTDATTGDILFAGKRINDVPANKRNVNTVFQDYALFPHMTVAENVAFGLTLQKRPKSEIAE--RVNQALRLVQ----LADYGDRAISALSGGQQQRIAIARAIVMQPQVLLLDEPLSALD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_BACCR (Spermidine/putrescine import ATP-binding protein potA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=potA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH--NVLPNYFEQN----QAEALDLDKTV---------LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + ++++    +L I+ GE   I+GP+GCGK+TLL++I G E P  G +LL +   N LP Y        Q  AL    TV         ++ V+ A +  R ++   L     F+    +RK + LSGG++ R+A  + +V    +L+LDEP   LD
Sbjct:   14 FGNQVIIPPLSLDIKEGEFLTILGPSGCGKTTLLRMIAGFETPTKGNLLLDDERINDLPPYKRHMNLVFQHYALFPHMTVEKNICFGMKMQKVSAAEQKERAEEAMRLTQLLEFR----NRKPAKLSGGQQQRVAIARAIVNNPRVLLLDEPLGALD 166          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: MDL1_CANAL (ATP-dependent permease MDL1 OS=Candida albicans GN=MDL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---NYFEQN----QAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNF---KADMLDRKV-----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +F   NL I++GE   ++GP+G GKST+ +L++    P  G + +G+  +     N++       Q E L    T+ E +    E A D  I++   L    NF     D LD K+     + LSGG+K R++  + +++   +L+LDE T+ LD  S+E
Sbjct:  457 IFKDLNLHIKQGENVCLVGPSGSGKSTVSQLLLRFYDPEKGTIQIGDDVITDLNLNHYRSKLGYVQQEPLLFSGTIKENILFGKEDATDEEINNALNLSYASNFVRHLPDGLDTKIGASNSTQLSGGQKQRVSLARTLIRDPKILILDEATSALDSVSEE 616          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_VIBCH (Fe(3+) ions import ATP-binding protein fbpC OS=Vibrio cholerae GN=fbpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 42/143 (29.37%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKAD---MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +L I++G    ++GP+GCGK+T+L+L+ GLEKP  G++ +   +V     +Q       Q+ AL    ++ E VA   +  ++  ++++  +       D   M +R V  +SGG++ R+A  + +V    +L+ DEP ++LD
Sbjct:   26 DLEIKKGSLVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTERSIQQRDICMVFQSYALFPHMSLYENVAYGLKMLKLPSEEVRQRVDEALKIVDLEGMGERYVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_ACTPL (Fe(3+) ions import ATP-binding protein fbpC OS=Actinobacillus pleuropneumoniae GN=fbpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 43/149 (28.86%), Postives = 78/149 (52.35%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + +  +L I+RG    ++GP+GCGK+T+L+L+ GLE P  G++ +   +V  +  +        Q+ AL    ++ + V         + + R   +K  L   +  A   DR V  +SGG++ R+A  + +V    +L+LDEP ++LD
Sbjct:   20 VIDNLDLVIKRGTMVTLLGPSGCGKTTVLRLVAGLENPTSGQIFIDGEDVTKSSIQNRDICIVFQSYALFPHMSIGDNVGYGLRMQGVSNEERKQRVKEALELVDL-AGFADRFVDQISGGQQQRVALARALVLKPKVLILDEPLSNLD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC1_HAEIN (Fe(3+) ions import ATP-binding protein fbpC 1 OS=Haemophilus influenzae GN=fbpC1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 43/150 (28.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   28 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEA------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ +  +LTI+RG    ++GP+GCGK+T+L+L+ GLE P  G++ +   +V  +  +        Q+ AL    ++ + V          ++ R   +K  L   +  A   DR V  +SGG++ R+A  + +V    +L+ DEP ++LD
Sbjct:   20 VVIDNLDLTIKRGTMVTLLGPSGCGKTTVLRLVAGLENPTSGQIFIDGEDVTKSSIQNRDICIVFQSYALFPHMSIGDNVGYGLKMQGIGKEERAQRVKEALELVDL-AGFEDRFVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLD 168          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RBSA2_RHILO6.542e-1229.63Ribose import ATP-binding protein rbsA 2 OS=Rhizob... [more]
POTA_PASMU6.542e-1231.37Spermidine/putrescine import ATP-binding protein p... [more]
POTA_MARAV6.542e-1230.25Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LEGPH6.542e-1229.63Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LACBA6.542e-1233.96Spermidine/putrescine import ATP-binding protein p... [more]
POTA_BACCR6.542e-1232.48Spermidine/putrescine import ATP-binding protein p... [more]
MDL1_CANAL6.542e-1230.63ATP-dependent permease MDL1 OS=Candida albicans GN... [more]
FBPC_VIBCH6.542e-1229.37Fe(3+) ions import ATP-binding protein fbpC OS=Vib... [more]
FBPC_ACTPL6.542e-1228.86Fe(3+) ions import ATP-binding protein fbpC OS=Act... [more]
FBPC1_HAEIN6.542e-1228.67Fe(3+) ions import ATP-binding protein fbpC 1 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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