CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EXPZ_BACSU (Nucleotide-binding protein expZ OS=Bacillus subtilis GN=expZ PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.742e-18
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + +R LF  AN TI+ GEK AIIGPNG GK+TLL +I+G E   G   +    N+   Y  Q   + L L++T  E         R   ++ L+    F A      +  +S GE+ ++    ++++   +L+LDEPTNHLD+PS+E
Sbjct:  301 FGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETAEGSVWVSPSANI--GYLTQEVFD-LPLEQTPEELFENETFKAR-GHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDEPTNHLDLPSRE 443          

HSP 2 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   19 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +D+ +F   N ++++G+   IIG NG GKSTLL LI     P  G++L    ++     EQ  A     D+T  E   +  E W +                  R    LSGGEK +    K + + + LL+LDEPTNHLD
Sbjct:   15 KDQTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIHNDLAPAQGQIL--RKDIKLALVEQETAAYSFADQTPAE--KKLLEKWHVP----------------LRDFHQLSGGEKLKARLAKGLSEDADLLLLDEPTNHLD 135          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF3_HUMAN (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.678e-18
Identity = 49/151 (32.45%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 EFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +F Y+ + ++F+R +++ +   +  ++G NG GKST+LKL++G   P  G +     N+   YF Q+  E LDL+ + +E +A        ++ +  LGR     ++  R ++ LSGG+K+R+AF +  +      +LDEPTNHLD+ + E
Sbjct:  498 DFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRG-IRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIE 647          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_MOUSE (ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.678e-18
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            FGYE  + LF   +  I+   +  I+GPNG GKSTLL L+ G   P  GE +   H +   +F Q  AE L +++T  E + + + +    D +  LGR   ++     ++  LSGG+KAR+ F +   +   +L+LDEPTN+LDI S
Sbjct:  624 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE-MRKNHRLKIGFFNQQYAEQLHMEETPTEYL-QRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 769          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_RAT (ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.109e-18
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            FGYE  + LF   +  I+   +  I+GPNG GKSTLL L+ G   P  GE +   H +   +F Q  AE L +++T  E + +   +    D +  LGR   ++     ++  LSGG+KAR+ F +   +   +L+LDEPTN+LDI S
Sbjct:  626 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE-MRKNHRLKIGFFNQQYAEQLHMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 771          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   10 FGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            FGY E+ LL    NL ++   + A++G NGCGK+TLLK++M   +P  G V       +  YF Q+  +++DL  + ++ ++++      ++ +  LG       +  +K+ LLSGG+K+R+AF    +    +LVLDEP+NHLD
Sbjct:  539 FGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRI-GYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLD 682          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP_BUCAP (ABC transporter ATP-binding protein uup OS=Buchnera aphidicola subsp. Schizaphis graminum GN=uup PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   10 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            F  E + +    +  I+ G+K  +IG NG GKST++K++MG +K + G +  G    +  YF+Q+++  LD +K++LE V    E    + +   + G L +  FK + +   V  LSGGE  RL   K  +KPS +L+LDEPTN LD+ + E
Sbjct:  296 FFIEKKTIIQSFSSIIQYGDKIGLIGNNGSGKSTMIKILMGEKKIQKGSIHFGTKLNIA-YFDQDRS-TLDSNKSILENVNNGREKIVLNGKEQHLIGYLKKFLFKPNQMKCLVKNLSGGECNRLLLAKLFLKPSNVLILDEPTNDLDLDTLE 446          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_PIG (ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            FGYE  + LF   +  I+   +  I+GPNG GKSTLL L+ G   P  GE +   H +   +F Q  AE L +++T  E + +   +    D +  LGR   ++     ++  LSGG+KAR+ F +   +   +L+LDEPTN+LDI S
Sbjct:  594 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 739          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_PANTR (ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17
Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            FGYE  + LF   +  I+   +  I+GPNG GKSTLL L+ G   P  GE +   H +   +F Q  AE L +++T  E + +   +    D +  LGR   ++     ++  LSGG+KAR+ F +   +   +L+LDEPTN+LDI S
Sbjct:  594 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 739          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y658_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0658 OS=Haemophilus influenzae GN=HI0658 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + ++  L +  G +  ++G NG GKSTL+KL+ G      G V L +  V   YF Q+Q + L  D++ L  + + A +     ++  LG   F  D +++ V   SGGEKARL     + +   LL+LDEPTNHLD+  ++
Sbjct:  331 ILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAK-GVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 471          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_HUMAN (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            FGY+  + LF   +  I+   +  I+GPNG GKSTLL L+ G   P  GE +   H +   +F Q  AE L +++T  E + +   +    D +  LGR   ++     ++  LSGG+KAR+ F +   +   +L+LDEPTN+LDI S
Sbjct:  632 FGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 777          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
EXPZ_BACSU2.742e-1836.05Nucleotide-binding protein expZ OS=Bacillus subtil... [more]
ABCF3_HUMAN4.678e-1832.45ATP-binding cassette sub-family F member 3 OS=Homo... [more]
ABCF1_MOUSE4.678e-1836.49ATP-binding cassette sub-family F member 1 OS=Mus ... [more]
ABCF1_RAT6.109e-1836.49ATP-binding cassette sub-family F member 1 OS=Ratt... [more]
GCN20_YEAST7.979e-1834.48Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20... [more]
UUP_BUCAP1.042e-1735.95ABC transporter ATP-binding protein uup OS=Buchner... [more]
ABCF1_PIG1.361e-1736.49ATP-binding cassette sub-family F member 1 OS=Sus ... [more]
ABCF1_PANTR1.361e-1736.49ATP-binding cassette sub-family F member 1 OS=Pan ... [more]
Y658_HAEIN3.032e-1734.51Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF1_HUMAN3.032e-1735.81ATP-binding cassette sub-family F member 1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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