CX296608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EXPZ_BACSU (Nucleotide-binding protein expZ OS=Bacillus subtilis GN=expZ PE=3 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 2.742e-18 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 + +R LF AN TI+ GEK AIIGPNG GK+TLL +I+G E G + N+ Y Q + L L++T E R ++ L+ F A + +S GE+ ++ ++++ +L+LDEPTNHLD+PS+E Sbjct: 301 FGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETAEGSVWVSPSANI--GYLTQEVFD-LPLEQTPEELFENETFKAR-GHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDEPTNHLDLPSRE 443 HSP 2 Score: 66.2402 bits (160), Expect = 7.233e-11 Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1 Query: 19 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 +D+ +F N ++++G+ IIG NG GKSTLL LI P G++L ++ EQ A D+T E + E W + R LSGGEK + K + + + LL+LDEPTNHLD Sbjct: 15 KDQTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIHNDLAPAQGQIL--RKDIKLALVEQETAAYSFADQTPAE--KKLLEKWHVP----------------LRDFHQLSGGEKLKARLAKGLSEDADLLLLDEPTNHLD 135
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF3_HUMAN (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.678e-18 Identity = 49/151 (32.45%), Postives = 87/151 (57.62%), Query Frame = 1 Query: 7 EFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 +F Y+ + ++F+R +++ + + ++G NG GKST+LKL++G P G + N+ YF Q+ E LDL+ + +E +A ++ + LGR ++ R ++ LSGG+K+R+AF + + +LDEPTNHLD+ + E Sbjct: 498 DFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRG-IRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIE 647
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_MOUSE (ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.678e-18 Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1 Query: 10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450 FGYE + LF + I+ + I+GPNG GKSTLL L+ G P GE + H + +F Q AE L +++T E + + + + D + LGR ++ ++ LSGG+KAR+ F + + +L+LDEPTN+LDI S Sbjct: 624 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE-MRKNHRLKIGFFNQQYAEQLHMEETPTEYL-QRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 769
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_RAT (ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.109e-18 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450 FGYE + LF + I+ + I+GPNG GKSTLL L+ G P GE + H + +F Q AE L +++T E + + + D + LGR ++ ++ LSGG+KAR+ F + + +L+LDEPTN+LDI S Sbjct: 626 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGE-MRKNHRLKIGFFNQQYAEQLHMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 771
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18 Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 10 FGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 FGY E+ LL NL ++ + A++G NGCGK+TLLK++M +P G V + YF Q+ +++DL + ++ ++++ ++ + LG + +K+ LLSGG+K+R+AF + +LVLDEP+NHLD Sbjct: 539 FGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRI-GYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLD 682
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UUP_BUCAP (ABC transporter ATP-binding protein uup OS=Buchnera aphidicola subsp. Schizaphis graminum GN=uup PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17 Identity = 55/153 (35.95%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 10 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 F E + + + I+ G+K +IG NG GKST++K++MG +K + G + G + YF+Q+++ LD +K++LE V E + + + G L + FK + + V LSGGE RL K +KPS +L+LDEPTN LD+ + E Sbjct: 296 FFIEKKTIIQSFSSIIQYGDKIGLIGNNGSGKSTMIKILMGEKKIQKGSIHFGTKLNIA-YFDQDRS-TLDSNKSILENVNNGREKIVLNGKEQHLIGYLKKFLFKPNQMKCLVKNLSGGECNRLLLAKLFLKPSNVLILDEPTNDLDLDTLE 446
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_PIG (ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450 FGYE + LF + I+ + I+GPNG GKSTLL L+ G P GE + H + +F Q AE L +++T E + + + D + LGR ++ ++ LSGG+KAR+ F + + +L+LDEPTN+LDI S Sbjct: 594 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 739
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_PANTR (ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17 Identity = 54/148 (36.49%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450 FGYE + LF + I+ + I+GPNG GKSTLL L+ G P GE + H + +F Q AE L +++T E + + + D + LGR ++ ++ LSGG+KAR+ F + + +L+LDEPTN+LDI S Sbjct: 594 FGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 739
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y658_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0658 OS=Haemophilus influenzae GN=HI0658 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17 Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 + ++ L + G + ++G NG GKSTL+KL+ G G V L + V YF Q+Q + L D++ L + + A + ++ LG F D +++ V SGGEKARL + + LL+LDEPTNHLD+ ++ Sbjct: 331 ILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAK-GVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 471
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF1_HUMAN (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17 Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 1 Query: 10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450 FGY+ + LF + I+ + I+GPNG GKSTLL L+ G P GE + H + +F Q AE L +++T E + + + D + LGR ++ ++ LSGG+KAR+ F + + +L+LDEPTN+LDI S Sbjct: 632 FGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGE-MRKNHRLKIGFFNQQYAEQLRMEETPTEYL-QRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIES 777 The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bpback to top |