CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_YERPE (Aliphatic sulfonates import ATP-binding protein ssuB OS=Yersinia pestis GN=ssuB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +R + +   L I  G+  A++G +GCGKSTLL+L+ GLE    G +L G  N L ++ +        +A  L   K +          WR D+   +L      AD  +   + LSGG+K R+A  + ++    LL+LDEP   LD
Sbjct:   22 YGNRTVLDNLQLRITAGQFVAVVGRSGCGKSTLLRLLAGLEAASDGTLLSG--NALLSHAKDETRLMFQEARLLPWKKVIDNVGLGLRGHWR-DEALQVLDTVGL-ADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALD 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_YERPA (Aliphatic sulfonates import ATP-binding protein ssuB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ssuB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +R + +   L I  G+  A++G +GCGKSTLL+L+ GLE    G +L G  N L ++ +        +A  L   K +          WR D+   +L      AD  +   + LSGG+K R+A  + ++    LL+LDEP   LD
Sbjct:   22 YGNRTVLDNLQLRITAGQFVAVVGRSGCGKSTLLRLLAGLEAASDGTLLSG--NALLSHAKDETRLMFQEARLLPWKKVIDNVGLGLRGHWR-DEALQVLDTVGL-ADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALD 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_PSEE4 (Aliphatic sulfonates import ATP-binding protein ssuB OS=Pseudomonas entomophila (strain L48) GN=ssuB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +  R +    +L I  G+  AI+G +GCGKSTLL+L+ GL++P GGE+L G   +     +       A  L   K +       + +WR   ++ L       A+      + LSGG+K R+A  + ++    LL+LDEP   LD
Sbjct:   26 FGQREVLRGVDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSGGELLAGAAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLSGNWRPRALEAL--DAVGLAERAHEWPAALSGGQKQRVALARALIHQPRLLLLDEPLGALD 169          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB1_BURXL (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Burkholderia xenovorans (strain LB400) GN=ssuB1 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK---VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +R + +  +L+IERG   AI+G +GCGKSTLL+L+ GLEK   G  E    E   L        A  L   K+VL+ V         +D + +L     +  +L+R     + LSGG++ R+A  + +V    LL+LDEP   LD
Sbjct:   89 YGEREVLSGFDLSIERGSFVAIVGRSGCGKSTLLRLVAGLEKATSGVLEKRNEEGGPLDTRIMFQDARLLPW-KSVLQNVMLGLGRSAREDARAVLA----EVGLLERANDWPAQLSGGQRQRVALARALVHRPQLLLLDEPLGALD 230          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_NITEC (Spermidine/putrescine import ATP-binding protein potA OS=Nitrosomonas eutropha (strain C91) GN=potA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 47/158 (29.75%), Postives = 82/158 (51.90%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + D    +  +L+I+ GE   ++GP+GCGK+TLL++I G + P  G++LL   ++     E+       Q+ AL    TV + VA   +  ++   +IK  + +   +  +     R    LSGG+K R+AF + ++    LL++DEP   LD   +E
Sbjct:   13 FGDFTAVDNVSLSIQAGEFFTLLGPSGCGKTTLLRMIAGFDVPDSGQILLDGQDIANTPPEKRPIHTVFQSYALFPHMTVADNVAFPLKMSKVAPAEIKKRMEKALEEVQLSRFTHRFPHELSGGQKQRVAFARGLINRPRLLLMDEPLGALDAKLRE 170          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAHCH (Spermidine/putrescine import ATP-binding protein potA OS=Hahella chejuensis (strain KCTC 2396) GN=potA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI------DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            NL+IE GE   I+GP+GCGK+T+L+LI G E    G ++L   +V     E+       Q+ AL    TV + VA   +  ++      + +K  L      +D   RK   LSGG+K R+A  + +V    +L+LDE  + LD
Sbjct:   26 NLSIEDGEFFTILGPSGCGKTTVLRLIAGFEGADEGRIMLNGQDVSKLSAEKRPVNTVFQSYALFPHMTVFDNVAFGLKMAKVSKPEIAERVKEALATVRL-SDFATRKPHQLSGGQKQRVAIARAVVNRPKVLLLDESLSALD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_CHRVO (Spermidine/putrescine import ATP-binding protein potA OS=Chromobacterium violaceum GN=potA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + D    N  +L++E GE   + GP+GCGK+TLL+++ G E+P  G++LL   ++     E+       Q+ AL    TV E +A   +  + D  K          D+      DR    +SGG++ R+A  + +V    LL+LDEP + LD   +E
Sbjct:   13 FGDYTAVNDVSLSVEAGEFFTLPGPSGCGKTTLLRMLAGFEQPDAGQILLDGQDMSQVAPEKRPVHTVFQSYALFPHMTVRENIAFPLKMAKWDKRKIAAQVDELLEDVRLTQFGDRYPHEMSGGQRQRVAIARALVDRPRLLLLDEPLSALDAKLRE 170          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI_BURPS (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei GN=nodI PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+D+L+ +  +  ++ GE   ++GPNG GK+T LK+++G+  P  G + L GE       +         Q + LD D TV E +   A  + +        +  LL     ++   D KV  LSGG K RL   + +V    +LVLDEPT  LD
Sbjct:   15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEFAKLES-KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI_BURP1 (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain 1710b) GN=nodI PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+D+L+ +  +  ++ GE   ++GPNG GK+T LK+++G+  P  G + L GE       +         Q + LD D TV E +   A  + +        +  LL     ++   D KV  LSGG K RL   + +V    +LVLDEPT  LD
Sbjct:   15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEFAKLES-KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI_BURMA (Nod factor export ATP-binding protein I OS=Burkholderia mallei GN=nodI PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+D+L+ +  +  ++ GE   ++GPNG GK+T LK+++G+  P  G + L GE       +         Q + LD D TV E +   A  + +        +  LL     ++   D KV  LSGG K RL   + +V    +LVLDEPT  LD
Sbjct:   15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFARYFGLTAHAARALVPPLLEFAKLES-KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
SSUB_YERPE3.247e-1132.43Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_YERPA3.247e-1132.43Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_PSEE43.247e-1131.51Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB1_BURXL3.247e-1135.37Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_NITEC3.247e-1129.75Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAHCH3.247e-1134.03Spermidine/putrescine import ATP-binding protein p... [more]
POTA_CHRVO3.247e-1131.01Spermidine/putrescine import ATP-binding protein p... [more]
NODI_BURPS3.247e-1132.26Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BURP13.247e-1132.26Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BURMA3.247e-1132.26Nod factor export ATP-binding protein I OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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