CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NODI_BURCA (Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE------HNVLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D+L+ N  + +++ GE   ++GPNG GK+T LK+++GL  P  G + L GE       +         Q + LD D TV E +          A+AA       +  LL     + +  D KV  LSGG K RL   + +V    +LVLDEPT  LD
Sbjct:   15 YGDKLVVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFSRYFGMSAQAARAL----VAPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_PHOLL (Fe(3+) ions import ATP-binding protein fbpC OS=Photorhabdus luminescens subsp. laumondii GN=fbpC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 44/159 (27.67%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + +  + +   L+I +G    ++GP+GCGK+T+L+L+ GLEKP  G++ +   +V     +Q       Q+ AL    ++ E +           AE  E  R+ +   L+    F+    DR V  +SGG++ R+A  + ++    +L+ DEP ++LD
Sbjct:   16 FGNNTVIDNLELSIPQGHMVTLLGPSGCGKTTVLRLVAGLEKPSAGKIFIDGEDVTDRSIQQRDICMVFQSYALFPHMSLGENIGYGLKMLGQPKAEIRE--RVKEALELVDLGGFE----DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y1051_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1051 OS=Haemophilus influenzae GN=HI1051 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   10 FGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE--QNQAEALDLDKTVL-----------------ETVAEAAEDWRIDDIKGLL----GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            F Y+  + L N  NLTI+ GEK  +IG +G GKST++ L++   + + GE+ +   NVL    E  + Q   +  D ++L                 E +  AAE     D    L    GR  + A + +R V  LSGG++ R+A  + M+K + +L+LDE T+ LD
Sbjct:  371 FAYDPTKPLLNHFNLTIKPGEKVGLIGRSGAGKSTIVNLLLRFYEAQQGEITIDGQNVLNVQQESLRRQIGLVTQDTSLLHRSVRDNIIYGRPNATDEEMVLAAERAEAADFIPFLSDSQGRKGYDAHVGERGVK-LSGGQRQRIAIARVMLKDAPILLLDEATSALD 537          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UGPC_RALSO (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Ralstonia solanacearum GN=ugpC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE--------ALDLDKTVLETVAEAAEDWRIDDIKGL-----LGRCNFKA------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ I  GE   I+GP+GCGKSTLL+++ GLE   GGEV +G+  V  N  E  + +        AL    TV + +A   +      I+GL     L R    A       +L+RK   LSGG++ R+A  + +V+   + + DEP ++LD
Sbjct:   23 DMEIGDGEFIVIVGPSGCGKSTLLRMVAGLEAITGGEVWIGDRVV--NELEPAERDIAMVFQNYALYPHMTVFDNMAYGLK------IRGLPKSEILARVQQAAGILELGKLLERKPRQLSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: THIQ_ERWCT (Thiamine import ATP-binding protein thiQ OS=Erwinia carotovora subsp. atroseptica GN=thiQ PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-------------------VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            R +  ++ GE+ AI+GP+G GKSTLL L+ G      GE                   +L  E+N+ P +    Q  AL L   +    A+ A   +I D  GL        D+LDR  S +SGG++ R A  + +V+   +L+LDEP + LD
Sbjct:   17 RFDFHVKPGERIAILGPSGAGKSTLLNLVAGFLMADSGELRLNGESHRETSPAKRPVSILFQENNLFP-HLTIGQNIALGLHPGLRLNAAQRATLQQIADRVGL-------TDLLDRLPSQVSGGQRQRAALARCLVRHQPILLLDEPFSALD 161          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SKFE_BACSU (SkfA peptide export ATP-binding protein skfE OS=Bacillus subtilis GN=skfE PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI---------DDIKGLLGRCNFKADMLDRKVSLLSG----GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + +I+RGE  A++GPNG GK+T ++ + GL KP  G++L+      P      +  AL  D+  L     AAE  +           D+K  +     K   L+ K + L G    G+K R+     +V+ + L +LDEPT  LDIPSK+
Sbjct:   23 SFSIQRGEIVALLGPNGAGKTTTIRCLTGLYKPDKGDILI--EGSPPGDINVQKKVALIPDQPYLYPALTAAEHIQFRARGYHPGKKDVKERVYHA-LKEVHLEEKANQLCGQLSRGQKQRVVLAGAIVQDALLYILDEPTVGLDIPSKQ 169          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_THEFY (Spermidine/putrescine import ATP-binding protein potA OS=Thermobifida fusca (strain YX) GN=potA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 48/148 (32.43%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQN---QAEALDLDKTVLETVAEAAEDWRID--DIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +L I +GE  +++GP+GCGK+T +++I G E+P  G V L   +V    PN  + N   Q+ AL    TV E VA   +  ++   +I+  +       ++ DR   K   LSGG++ R+A  + +V   + L+LDEP   LD+  ++
Sbjct:   49 DLEIRQGEFFSLLGPSGCGKTTTMRMIAGFEEPTSGVVRLSGKDVTGVPPNRRDVNMVFQSYALFPHMTVAENVAFGLKRKKVPAAEIRTRVAEMLELVELGDRAKYKPRQLSGGQQQRVALARALVNRPSALLLDEPLGALDLKLRQ 196          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_PSEAB (Spermidine/putrescine import ATP-binding protein potA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=potA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 49/167 (29.34%), Postives = 80/167 (47.90%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-------------EHNVLPNY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + D    +  +LTI  GE   ++GP+GCGK+TLL+++ G ++P  GE+ L               H V  +Y         QN A  L +   V ++  +A  +  + D++         AD   R  + LSGG++ R+A  + +V    LL+LDEP + LD   +E
Sbjct:   15 FGDFTAVDNVSLTINTGEFFTLLGPSGCGKTTLLRMLAGFDQPDSGEIRLNGQDLAGVEPEKRPVHTVFQSYALFPHMSVAQNIAFPLKM-AGVAKSEIDARVEQALKDVR--------LADKGGRMPTQLSGGQRQRVAIARALVNRPRLLLLDEPLSALDAKLRE 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_NITEU (Spermidine/putrescine import ATP-binding protein potA OS=Nitrosomonas europaea GN=potA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            NL+IE GE   ++GP+GCGK+TLL++I G + P  G++LL   ++     E+       Q+ AL    TV + VA   +       +IK  + +   +  +     R    LSGG+K R+AF + ++    LL++DEP   LD   +E
Sbjct:   23 NLSIEAGELFTLLGPSGCGKTTLLRMIAGFDVPDSGQILLDGQDIANTPPEKRPIHTVFQSYALFPHMTVADNVAFPLKMSGKTPAEIKKRVEKALEEVQLSRFTHRFPHELSGGQKQRVAFARGLINRPRLLLMDEPLGALDAKLRE 170          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAEDU (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus ducreyi GN=potA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 48/154 (31.17%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D+ +    NLTI  GE   I+GP+GCGK+T L+LI G E    G ++L   +V     E+       Q+ AL    T+ E VA      ++ +      +   L     + D  ++K + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   19 YGDKTILKDLNLTINDGEFLTILGPSGCGKTTALRLIAGFEDLTEGSIILDGQDVSNVSAEKRPVNTVFQSYALFPHMTIFENVAFGLRMQKVPNEQITPRVMEALRMVRLE-DRAEQKPAQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 171          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
NODI_BURCA3.247e-1133.96Nod factor export ATP-binding protein I OS=Burkhol... [more]
FBPC_PHOLL3.247e-1127.67Fe(3+) ions import ATP-binding protein fbpC OS=Pho... [more]
Y1051_HAEIN4.241e-1132.14Uncharacterized ABC transporter ATP-binding protei... [more]
UGPC_RALSO4.241e-1133.77sn-glycerol-3-phosphate import ATP-binding protein... [more]
THIQ_ERWCT4.241e-1132.68Thiamine import ATP-binding protein thiQ OS=Erwini... [more]
SKFE_BACSU4.241e-1132.67SkfA peptide export ATP-binding protein skfE OS=Ba... [more]
POTA_THEFY4.241e-1132.43Spermidine/putrescine import ATP-binding protein p... [more]
POTA_PSEAB4.241e-1129.34Spermidine/putrescine import ATP-binding protein p... [more]
POTA_NITEU4.241e-1132.43Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAEDU4.241e-1131.17Spermidine/putrescine import ATP-binding protein p... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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