CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY    LLF   N  I+   + A++GPNG GKST+LKLI G  +P  G V      V    F Q+  + LDL    L  +           ++  LG      ++  + +  LSGG+K+R+AF K   K   LL+LDEP+NHLD+ + E
Sbjct:  511 FGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSA-KVRVAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDLDAVE 659          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YFMR_BACSU (Uncharacterized ABC transporter ATP-binding protein yfmR OS=Bacillus subtilis GN=yfmR PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.172e-17
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE-----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+ R+L +R N  +  GE+  IIGPNG GK+TLL  + G   P GG++ +G+  V   Y+ Q+ +E ++ +  V++ + E AE     D  +   + +L R  F   M    +  LSGGEK RL   + +++   +L LDEPTN LD
Sbjct:  328 YDGRMLVDRFNELVIPGERIGIIGPNGIGKTTLLNALAGRHTPDGGDITIGQ-TVRIGYYTQDHSE-MNGELKVIDYIKETAEVVKTADGDMITAEQMLERFLFPRSMQQTYIRKLSGGEKRRLYLLQVLMQEPNVLFLDEPTNDLD 472          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF2_DICDI (ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.755e-17
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            G E  +L+   +L I+   + A++GPNG GKSTLLKL++G   P  G +    H  +  Y  Q+  E LDL  T L+ V        +  E+WR +     +GR           +  +S G K+RL FC   ++   LL+LDEPTNHLD+
Sbjct:  375 GKEADVLYRNLDLAIDLDSRIALVGPNGAGKSTLLKLMVGQISPTQGFIKKHSHLKMARY-HQHAHEVLDLTATPLDFVRSKFAHMNKDTEEWRRE-----IGRFGVTGKAQTEAIGCMSDGIKSRLIFCLMALENPHLLLLDEPTNHLDM 519          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ARB1_YEAST (ABC transporter ATP-binding protein ARB1 OS=Saccharomyces cerevisiae GN=ARB1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.718e-16
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV----AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            L+   N  ++   + A++GPNG GKSTLLK++ G   P+ G V    H  L  Y + +Q + LDL K+ LE V    +  ++D++    +G LGR     +    +++ LS G+++R+ F    ++   +L+LDEPTN LDIP+
Sbjct:  410 LYEHLNFGVDMDSRIALVGPNGVGKSTLLKIMTGELTPQSGRVSRHTHVKLGVYSQHSQ-DQLDLTKSALEFVRDKYSNISQDFQF--WRGQLGRYGLTGEGQTVQMATLSEGQRSRVVFALLALEQPNVLLLDEPTNGLDIPT 550          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_RICBR (Zinc import ATP-binding protein znuC OS=Rickettsia bellii (strain RML369-C) GN=znuC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.754e-16
Identity = 45/147 (30.61%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q    + DL  TV + +   A +   +DIK +    + +  + D+K+S LSGG+  ++     ++    L++LDEP   LD+ S++
Sbjct:   15 FGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTSGEIII-DPRLKIGYVPQKFNLSSDLPITVKKFLDLLAPNNLTNDIKEIHSFIDLER-LKDQKISTLSGGQFQKIVLASSLLSKPDLIILDEPLQSLDVTSQQ 159          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: TLRC_STRFR (Tylosin resistance ATP-binding protein tlrC OS=Streptomyces fradiae GN=tlrC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 61/183 (33.33%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF----EQNQAEALDLDKTVLE-----------TVAEAAEDWRIDDIKGLLGRCNFKADM-----------------------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+DR++ ++ +L I  GEK  IIG NG GKSTLL+L+ G E+P  GEV +   G    LP            +A+DL  T L             +AEAA D  + D      R   + ++                        DR++  LSGGE++RLA    +     LL+LDEPTN LD
Sbjct:   18 YDDRVVLSQVSLAISPGEKAGIIGDNGAGKSTLLRLLAGEERPDAGEVTVIAPGGVGYLPQTLGLPPRATVQDAIDLAMTELRVLEAELRRTEAALAEAATDEALQDALTAYARLTEQYEVRDGYGADARVDAALHGLGLPGLPRDRRLGTLSGGERSRLALAATLASQPELLLLDEPTNDLD 200          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: AB1F_ARATH (ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 1
Query:   10 FGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            FGY  D L++   +  ++   + A++GPNG GKSTLLKL+ G   P  G V    H  +  Y  Q+ AE LDL+   L  +         + ++  +GR           +  LS G+++R+ F     K   +L+LDEPTNHLDI
Sbjct:  387 FGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQY-HQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDI 531          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_MARAV (Zinc import ATP-binding protein znuC OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=znuC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE--AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++DR + +R NLT+ RG+   IIGPNG GK+TL+K ++G+++   G++     +V P        + L L+ T+  +V          + D    L R    A +LD  V  LSGGEK RL   + + +   LLVLDEP   +DI
Sbjct:   15 FDDRPVVDRVNLTVSRGDIVTIIGPNGAGKTTLIKTVLGIQRATSGQL-----SVAPGLVIGYVPQHLTLEPTLPLSVRRFMLLSGRTLADCTAALERTGV-AHLLDASVHHLSGGEKQRLLLARALARKPDLLVLDEPAQGVDI 153          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            +    ++ ++   +  ++GPNG GKST+LKL++    P  G  ++  H  L   YF Q+  + LDL+   L  +A+       ++ +  LG       +  +K+  LSGG+K+R+AF    ++   +L+LDEPTNHLD+ S +
Sbjct:  533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSG--IVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMD 673          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_RICCN (Zinc import ATP-binding protein znuC OS=Rickettsia conorii GN=znuC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 47/150 (31.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q      DL  TV   LE +A +  +  I +I   +   + K    D+++S LSGG+  ++     +V    L++LDEP   LD+ S++
Sbjct:   15 FGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTSGEIII-DPKLKIGYVPQKFGLTPDLPITVKNFLELLAPSNFNNNIKEINSFIDLEHIK----DQEISKLSGGQFQKVVLACSIVNNPDLIILDEPLQSLDVTSQQ 159          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
AB3F_ARATH3.032e-1736.67ABC transporter F family member 3 OS=Arabidopsis t... [more]
YFMR_BACSU5.172e-1736.05Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF2_DICDI6.755e-1735.76ABC transporter F family member 2 OS=Dictyostelium... [more]
ARB1_YEAST5.718e-1634.72ABC transporter ATP-binding protein ARB1 OS=Saccha... [more]
ZNUC_RICBR9.754e-1630.61Zinc import ATP-binding protein znuC OS=Rickettsia... [more]
TLRC_STRFR1.274e-1533.33Tylosin resistance ATP-binding protein tlrC OS=Str... [more]
AB1F_ARATH1.274e-1534.25ABC transporter F family member 1 OS=Arabidopsis t... [more]
ZNUC_MARAV3.706e-1535.17Zinc import ATP-binding protein znuC OS=Marinobact... [more]
YB89_SCHPO3.706e-1531.47Uncharacterized ABC transporter ATP-binding protei... [more]
ZNUC_RICCN1.078e-1431.33Zinc import ATP-binding protein znuC OS=Rickettsia... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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