CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_CLONN (Spermidine/putrescine import ATP-binding protein potA OS=Clostridium novyi (strain NT) GN=potA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            NL I++ E   ++GP+GCGK+T L+++ G E    GEV+    + N +P Y  Q     Q  AL    ++ E +A      ++  D IK  + R     D+    +R +  LSGG++ R+A  + +V    +L+LDEP   LD+
Sbjct:   25 NLNIKKNEFLTLLGPSGCGKTTTLRILGGFEDATNGEVIFEGKKINDVPPYKRQINTVFQKYALFPHMSIFENIAFGLNIKKVPKDQIKTRVKRMLKLVDLEGYENRSIDSLSGGQQQRIAIARALVNEPKVLLLDEPLGALDL 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA1_PSEAE (Spermidine/putrescine import ATP-binding protein potA 1 OS=Pseudomonas aeruginosa GN=potA1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 1
Query:   40 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            R +L I   E   ++GP+GCGK+TLL++I G E P  GE+LL GE+      FE+      Q  AL    ++ E +A   E   +    G         +ML         DR+   LSGG++ R+A  + +     +L+LDEP + LD+  ++
Sbjct:   33 RVDLDIRDNEFFTLLGPSGCGKTTLLRMIAGFEFPTEGEILLYGENIAARPPFERPVNTVFQHYALFPHMSIAENLAFGLESRPLGRSLGKAEIAERVREMLALVQMERFADRRPGQLSGGQQQRVALARALAPQPRVLLLDEPLSALDLKLRQ 186          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: NIKE_SHIBS (Nickel import ATP-binding protein nikE OS=Shigella boydii serotype 4 (strain Sb227) GN=nikE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFE------------QNQAEALDLDKTVLETVAE-------AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++ + + N  +LT++ GE  A++G +GCGKSTL +L++GLE P  G +   GE     N  +            Q+   A++  KTV E + E         +  ++     +L   +    +LD++   LSGG+  R+   + +     LL+LDE  ++LD+
Sbjct:   22 HQHQAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDETVSNLDL 184          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: HMUV_RHOPA (Hemin import ATP-binding protein hmuV OS=Rhodopseudomonas palustris GN=hmuV PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 54/176 (30.68%), Postives = 79/176 (44.89%), Query Frame = 1
Query:   10 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--------------------LLGEHNVL--PNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK--------PSTLLVLDEPTNHLDI 444
            F      L +R +LTI +GE  AI+GPNG GKSTLL+++ G  +P  G V                    +L +H  +  P   E+  A   D+D      + +AA  D  +D  +              R ++ LSGGE+ R  F + +V+           LL+LDEPT+ LDI
Sbjct:   12 FALPGATLVDRVDLTITQGELVAIVGPNGAGKSTLLRMLSGDLRPTSGTVSLDGRALADYPPRALAARRAMLAQHTTVSFPFSVEEIVAMGADIDPRKAAPLFDAALRDVGLDHFR-------------HRDITTLSGGEQQRAHFARILVQLWSGEADAGPGLLLLDEPTSSLDI 174          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_BRUAB (Fe(3+) ions import ATP-binding protein fbpC OS=Brucella abortus GN=fbpC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP----NYFEQNQAEALDLDKTVLETVAEAAED---------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +LT+E G    ++GP+GCGK+T L+L+ GLE P  G +L+G  +V  LP    +     Q+ AL    T LE VA   E           R ++   L+G       M  R  + LSGG++ R+A  + +V    +L+LDEP + LD
Sbjct:   28 SLTVEPGTLVTLLGPSGCGKTTTLRLLAGLEHPTSGRILIGGKDVTNLPANERDVSMVFQSYALFPHMTSLENVAYGLESSGFKKNEARERAEEGLKLVG----LGGMGHRLPAELSGGQQQRVAVARALVLEPQVLLLDEPLSTLD 170          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_BRUA2 (Fe(3+) ions import ATP-binding protein fbpC OS=Brucella abortus (strain 2308) GN=fbpC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP----NYFEQNQAEALDLDKTVLETVAEAAED---------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +LT+E G    ++GP+GCGK+T L+L+ GLE P  G +L+G  +V  LP    +     Q+ AL    T LE VA   E           R ++   L+G       M  R  + LSGG++ R+A  + +V    +L+LDEP + LD
Sbjct:   28 SLTVEPGTLVTLLGPSGCGKTTTLRLLAGLEHPTSGRILIGGKDVTNLPANERDVSMVFQSYALFPHMTSLENVAYGLESSGFKKNEARERAEEGLKLVG----LGGMGHRLPAELSGGQQQRVAVARALVLEPQVLLLDEPLSTLD 170          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CYSA_METCA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Methylococcus capsulatus GN=cysA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVA-------------EAAEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +LTI  GE  A++GP+GCGK+TLL++I GLE    G++LL   +    +  +       Q  AL    +V E +A             EA    R+ ++  L+     + D L DR    LSGG++ R+A  + +     +L+LDEP   LD
Sbjct:   22 DLTIGSGELVALLGPSGCGKTTLLRIIAGLEAADSGQILLHGEDTTHRHVRERRVGFVFQHYALFRHMSVFENIAFGLRVRPRGQRPPEAEIRRRVQELLELV-----QLDWLADRHPGQLSGGQRQRIALARALAVEPKVLLLDEPFGALD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CBIO1_STAS1 (Cobalt import ATP-binding protein cbiO 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 49/165 (29.70%), Postives = 84/165 (50.91%), Query Frame = 1
Query:    1 RGEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-------------LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            R ++  ++ L  N  +  I +G+ T+I+G NG GKST+ KL++G+EKP  G +              L +H  +     +NQ     +  TV   VA   E+  +  DD++ ++ +     +MLDR   +   LSGG+K R+A    +   + +++LDE T+ LD
Sbjct:   14 RFKYNSDEPLALNDVSFGIPKGKWTSIVGHNGSGKSTIAKLMVGIEKPSDGHIYFRNQCINQQNLSDLRQHIGIVFQNPENQF----VGSTVAFDVAFGLENNSVSYDDMQRIVPKALEDVEMLDRADYEPQSLSGGQKQRVAIAGVLALNTDVIILDEATSMLD 174          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
POTA_CLONN9.447e-1131.94Spermidine/putrescine import ATP-binding protein p... [more]
POTA1_PSEAE9.447e-1131.82Spermidine/putrescine import ATP-binding protein p... [more]
NIKE_SHIBS9.447e-1127.61Nickel import ATP-binding protein nikE OS=Shigella... [more]
HMUV_RHOPA9.447e-1130.68Hemin import ATP-binding protein hmuV OS=Rhodopseu... [more]
FBPC_BRUAB9.447e-1134.69Fe(3+) ions import ATP-binding protein fbpC OS=Bru... [more]
FBPC_BRUA29.447e-1134.69Fe(3+) ions import ATP-binding protein fbpC OS=Bru... [more]
CYSA_METCA9.447e-1132.24Sulfate/thiosulfate import ATP-binding protein cys... [more]
CBIO1_STAS19.447e-1129.70Cobalt import ATP-binding protein cbiO 1 OS=Staphy... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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