CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_MANSM (Spermidine/putrescine import ATP-binding protein potA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=potA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 53/156 (33.97%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---------GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLL---GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y +  + +  NLTI  GE   I+GP+GCGK+T+L+LI G E+  GG+++L          EH  +   F   Q+ AL    T+ E VA      ++  ++IK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YNENTIIDNFNLTINNGEFLTILGPSGCGKTTVLRLIAGFEEANGGQIILDGEDVTDLPAEHRPVNTVF---QSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_RICFE (Zinc import ATP-binding protein znuC OS=Rickettsia felis GN=znuC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 46/150 (30.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + ++L  N  + T+++   T +IGPNG GK+T+++L++GLEKP  GE+++ +  +   Y  Q      DL  TV   L+ +A +  +  I +I   +   + K    D+++S LSGG+  ++     +V    L++LDEP   LD+ S++
Sbjct:   15 FGNKLPINNVSFTVKKNNITTLIGPNGAGKTTIVRLMLGLEKPTNGEIII-DPKLKIGYVPQKFGLTPDLPITVKKFLDLLAPSNFNSNIKEINSFIDLEHIK----DQEISKLSGGQFQKVVLACSIVNKPDLIILDEPLQSLDVTSQQ 159          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.839e-14
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGYE R  +F + ++ I+   K A++G NG GKSTL+KL+ G L +  G   +     +    F Q+  + LD   T +E       +  +  I+  LGR      +   K++ LSGG+K+R+   +       +L+LDEPTNHLDI + E
Sbjct:  930 FGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLHETTG--YIERSRKMRVARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSGGQKSRVILAELAWAEPHILLLDEPTNHLDIDAIE 1078          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.138e-14
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   10 FGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            F Y +R  F  +N+   I+ G + AI+GPNG GKSTLL L+ G   P  GE+   +   +  Y  Q+  + L + +T ++ +     D     + + ++  LG+    +      ++ LSGG+KAR+ F    +    +L+LDEPTNHLD+ S
Sbjct:  503 FSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRY-SQHFVDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS 654          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAES1 (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus somnus (strain 129Pt) GN=potA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-14
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRID--DIKGLLG---RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+ + + N  NLTI  GE   I+GP+GCGK+T+L+LI G E+   G ++L   +V     E+       Q+ AL    T+ E VA      ++   DIK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YDTKTIINNFNLTINNGEFLTILGPSGCGKTTVLRLIAGFEELNEGRIILDGEDVTDIPAERRHINTVFQSYALFPHMTIFENVAFGLRMQKVPNADIKPRVMEALRMVRLEEMADRKPTQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3_SCHPO (Elongation factor 3 OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-14
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y  ++L NR  L ++RG +  + GPNG GKSTL++ I+  +    P     +  EH++     ++++A+   +D  +L+  A   +D   D+I   L   +F  ++++  +  LSGG K +LA  + M K   +L+LDEPTNHLD+
Sbjct:  444 YGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLRTVYVEHDI-----DESEADTPSVD-FILQDPAVPIKDR--DEIVKALKENSFTDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDV 581          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_FUSNN (Spermidine/putrescine import ATP-binding protein potA OS=Fusobacterium nucleatum subsp. nucleatum GN=potA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQN---QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            NL IE+GE  +IIGP+GCGK+TLL++I G   P  G + LG+ N++   PN    N   Q  AL     V E VA      ++D+ K +    N    ++       +KVS LSGG++ R++  + ++    +L+LDEP + LD
Sbjct:   25 NLKIEQGEFFSIIGPSGCGKTTLLRMIAGFISPDSGAIYLGDENIVNLPPNLRNVNTIFQKYALFPHLNVFENVAFPLRLKKVDE-KTINEEVNKYLKLVGLEEHSTKKVSQLSGGQQQRISIARALINKPGVLLLDEPLSALD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3_CANGA (Elongation factor 3 OS=Candida glabrata GN=TEF3 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y  ++L N+  L ++RG +  + GPNG GKSTL++ I      G   P     +  EH++          +    D +VL+ V  ++E    + I   L    F  +M++  +S LSGG K +LA  + ++K + +L+LDEPTNHLD
Sbjct:  440 YGAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAIANGQVDGFPTPEECMTVYVEHDI----------DGTHADTSVLDFVV-SSEVGTKEAITAKLVEFGFTEEMINMPISSLSGGWKMKLALARAVLKNADILLLDEPTNHLD 575          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_MAGSA (Zinc import ATP-binding protein znuC OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=znuC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.990e-14
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   28 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            L+ +R +LT++ G    ++GPNG GKS+LLK+ +GL +P  G V  G   +  +P   +  +   L + + +   VAE     R+++   L+G       +L R+V  LSGGE  R+   + +++   LLVLDEP   +D+
Sbjct:   17 LVLDRVDLTVDAGRIITVVGPNGAGKSSLLKVALGLLRPDAGTVERGAKVIGYVPQRLDIGRLLPLSVRRFLAMAVAERPPAGRLEETLDLVG----AGHVLGRQVVDLSGGEMQRVLLARALLRRPDLLVLDEPVGGVDV 153          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: HFAC_CAUCR (Holdfast attachment protein C OS=Caulobacter crescentus GN=hfaC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.990e-14
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI-----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            + +R +    +  I RG++ A++GPNG GK+TL+KL++G  +   G V LG  N+  +Y +Q +  AL    TV + +     D  I       + G      F    L + V+ LSGGE+ RL   + +  P+ L+VLDEPTN LD+
Sbjct:  294 FGERTIVENFSTRILRGDRVALVGPNGAGKTTLVKLLLGELERDAGTVQLGT-NLEVSYIDQARM-ALSDKITVWDFLTPGGGDSIIVRGHPKHVAGYAKEFLFTDAQLRQPVTSLSGGERNRLLLARALANPTNLMVLDEPTNDLDM 439          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
POTA_MANSM1.078e-1433.97Spermidine/putrescine import ATP-binding protein p... [more]
ZNUC_RICFE1.408e-1430.67Zinc import ATP-binding protein znuC OS=Rickettsia... [more]
ABCF4_DICDI1.839e-1433.77ABC transporter F family member 4 OS=Dictyostelium... [more]
AB4F_ARATH3.138e-1432.68ABC transporter F family member 4 OS=Arabidopsis t... [more]
POTA_HAES14.098e-1434.64Spermidine/putrescine import ATP-binding protein p... [more]
EF3_SCHPO4.098e-1432.88Elongation factor 3 OS=Schizosaccharomyces pombe G... [more]
POTA_FUSNN5.352e-1436.11Spermidine/putrescine import ATP-binding protein p... [more]
EF3_CANGA5.352e-1432.65Elongation factor 3 OS=Candida glabrata GN=TEF3 PE... [more]
ZNUC_MAGSA6.990e-1432.62Zinc import ATP-binding protein znuC OS=Magnetospi... [more]
HFAC_CAUCR6.990e-1434.46Holdfast attachment protein C OS=Caulobacter cresc... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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