CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3A_YEAST (Elongation factor 3A OS=Saccharomyces cerevisiae GN=YEF3 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 6.990e-14
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y  ++L N+  L ++R  +  I GPNGCGKSTL++ I      G         +  EH++          +    D +VL+ V E+    + + IK  L    F  +M+   +S LSGG K +LA  + +++ + +L+LDEPTNHLD
Sbjct:  440 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 575          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YBP8_SCHPO (Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe GN=SPBC16H5.08c PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.129e-14
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 450
            G  D  L+   +  I+   + AI+G NG GKSTLL LI GL  P  G V       +  Y  Q+ A+ L  DK+ LE + +  +    +  +   + +LG+          ++  LS G K+R+ F    ++   +L+LDEPTNHLDI S
Sbjct:  399 GNLDHALYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKY-SQHSADQLPYDKSPLEYIMDTYKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHLDITS 547          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_LAWIP (Spermidine/putrescine import ATP-binding protein potA OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=potA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.129e-14
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE------ALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +ED    +  NL I  GE   ++GP+GCGK+T+L++I G E P  GE+L+   NV     E+ Q        AL    TV + VA     +     +++++     R     +  DR+ S LSGG++ R+A  + +V    LL+LDEP + LD
Sbjct:   17 FEDTCALDNINLQIANGEFLTLLGPSGCGKTTILRIISGFETPDVGEILIAGVNVSGFPPERRQVNTVFQHYALFPHMTVRDNVAFGLRMQKCPREKVNELVFEALRMVHLENFADRRPSQLSGGQQQRVAIARAVVNKPLLLLLDEPFSALD 169          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CCMA_GLUOX (Cytochrome c biogenesis ATP-binding export protein ccmA OS=Gluconobacter oxydans GN=ccmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.129e-14
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   22 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-------LGEHNVLPN--YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            DRL+ +  +LT++ G+   + GPNG GKSTLL+ I GL +P  GEV+       LG  + L       QN A A  L    L    EA +   + D+                   LLS G+K R AF + M+  + L +LDEPT  LD+ S E
Sbjct:   28 DRLVLDGVSLTLDAGDAMILTGPNGAGKSTLLRTISGLRRPDSGEVIRYGDLAWLGHQDALKPGLTLAQNLALAEKLGTNSLSDALEALDLTHLTDL----------------PARLLSSGQKRRAAFARVMLSGALLWLLDEPTVGLDVASIE 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_PHOPR (Fe(3+) ions import ATP-binding protein fbpC OS=Photobacterium profundum GN=fbpC PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 49/157 (31.21%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVA--------EAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + D  + N  +L I++G    ++GP+GCGK+T+L+L+ GLEKP  G++ +   +V     +Q       Q+ AL    ++ + V          AAE   R+DD   L+      + M DR V  +SGG++ R+A  + +V    +L+ DEP ++LD
Sbjct:   16 FGDNTVINNLDLEIKKGSLVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTNTSIQQRDICMVFQSYALFPHLSLYDNVGYGLKMLKLPAAEIKQRVDDALKLVD----LSGMGDRFVDQISGGQQQRIALARALVLKPKVLLFDEPLSNLD 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++N     I+   + A++GPNG GKSTLLKL+ G   P  G +    H  +  Y  Q+  E LDLD + LE + +   E    ++++ ++GR           +  LS G+K R+       +   +L LDEPTNHLDI
Sbjct:  417 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRY-HQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 554          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++N     I+   + A++GPNG GKSTLLKL+ G   P  G +    H  +  Y  Q+  E LDLD + LE + +   E    ++++ ++GR           +  LS G+K R+       +   +L LDEPTNHLDI
Sbjct:  412 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRY-HQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 549          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ABCF2_BOVIN (ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++N     I+   + A++GPNG GKSTLLKL+ G   P  G +    H  +  Y  Q+  E LDLD + LE + +   E    ++++ ++GR           +  LS G+K R+       +   +L LDEPTNHLDI
Sbjct:  414 IYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRY-HQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDI 551          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB1_NOCFA (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Nocardia farcinica GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.557e-13
Identity = 55/149 (36.91%), Postives = 75/149 (50.34%), Query Frame = 1
Query:    1 RGEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            R  FG  D+ + +  +LTI RGE   ++GP+G GK+TLL+L+ GLE P  GEVL+ G    +       Q   L   K VL  V       R +   GL      + D   D+  + LSGGE  R A  + +V+   LL+LDEP   LD
Sbjct:   14 RKSFG--DKTVLDGVDLTIRRGEFVVLLGPSGTGKTTLLRLLTGLEVPDAGEVLVPGRRTTV------YQEPRLIPSKRVLANVLVGLRRTRSNRAAGLAALAEVQLDGKADQWPATLSGGEAQRAALARALVREPELLLLDEPFAALD 154          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: YVRA_BACSU (Uncharacterized ABC transporter ATP-binding protein yvrA OS=Bacillus subtilis GN=yvrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 53/163 (32.52%), Postives = 77/163 (47.24%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL-----DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            GY D  L N  +LT+E+GE   I+GPNG GK+TLL L+ G    + G V L    +L +Y  +  A+ +      +D+    TV E     R     GL  +   K              AD   + +  LSGGE+ R+   + + +   +L LDEPTN LD+
Sbjct:    9 GYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKKGRVYLA-GKLLADYKPKELAQIMAVLPQKMDQAFTFTVEETVAFGRYPFQTGLFRQQTEKGEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDL 170          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
EF3A_YEAST6.990e-1432.65Elongation factor 3A OS=Saccharomyces cerevisiae G... [more]
YBP8_SCHPO9.129e-1433.33Uncharacterized ABC transporter ATP-binding protei... [more]
POTA_LAWIP9.129e-1433.33Spermidine/putrescine import ATP-binding protein p... [more]
CCMA_GLUOX9.129e-1435.06Cytochrome c biogenesis ATP-binding export protein... [more]
FBPC_PHOPR1.192e-1331.21Fe(3+) ions import ATP-binding protein fbpC OS=Pho... [more]
ABCF2_MOUSE1.192e-1333.81ATP-binding cassette sub-family F member 2 OS=Mus ... [more]
ABCF2_HUMAN1.192e-1333.81ATP-binding cassette sub-family F member 2 OS=Homo... [more]
ABCF2_BOVIN1.192e-1333.81ATP-binding cassette sub-family F member 2 OS=Bos ... [more]
SSUB1_NOCFA1.557e-1336.91Aliphatic sulfonates import ATP-binding protein ss... [more]
YVRA_BACSU2.034e-1332.52Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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