CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3_CANAL (Elongation factor 3 OS=Candida albicans GN=TEF3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK-GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y  ++L N+    ++R  +  + GPNG GKSTL++ I        G+V      +     + ++  +    D TV+E V E  E     D+    L   NF  +M++  +  LSGG K +LA  + ++K + +L+LDEPTNHLD
Sbjct:  442 YGAKILLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIAN------GQVEGFPTQDECKTVYVEHDIDGTHADTTVVEFVIEDGEVGLTKDVVVDKLREFNFSDEMINMPIQSLSGGWKMKLALARAVLKNADILLLDEPTNHLD 579          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: CCMA_METCA (Cytochrome c biogenesis ATP-binding export protein ccmA OS=Methylococcus capsulatus GN=ccmA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   22 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL---LGEHNVLPNYFEQ----NQAEALDLDKTVLETV-------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            DRLLF+  NLT+  G+   + G NG GK++LL+++ GL +P  GEV    L   +   +YF +      A  L  + + LE +          A++ RIDD    +G   F+    D     LS G+K R A C+ ++ P  L +LDEP   LD+
Sbjct:   17 DRLLFSGLNLTLSPGQLLQVEGANGAGKTSLLRVLAGLSRPAEGEVRWRGLDIQHHRASYFTEMVYMGHAPGLKAELSPLENLRVSVALRGRMADEARIDDALARVGLRGFE----DVPARGLSAGQKQRTALCRLLLDPVPLWILDEPFTALDV 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_AERHH (Zinc import ATP-binding protein znuC OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=znuC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++ R + ++ + T+ +G+ T ++GPNG GKSTL KL++GL  P  G++     ++   Y  Q     L LD T+  TV    +  ++ R+  I+  L R   + D+LD ++  LSGGE  R+   + ++    LLVLDEP   +DI
Sbjct:   14 FDGRSVLDKVSFTLNKGKITTLVGPNGAGKSTLSKLVLGLLTPDSGQI-TRSRDLRVGYVPQR----LYLDPTLPLTVRRFLQLGKNGRL-SIEEALNRVGAE-DLLDNRMQKLSGGEMQRVLLARALLVKPELLVLDEPVQGVDI 152          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y089_METJA (Uncharacterized ABC transporter ATP-binding protein MJ0089 OS=Methanocaldococcus jannaschii GN=MJ0089 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    7 EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR-CNFKADMLDRKVSL--------------------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 453
            EF Y+ R + N     ++RGE  +I+G NG GKSTLLK I  + KP+ G +L+       + F+    + L+L K V      A  ++       LLGR  + K ++ DR + +                    LSGGE  ++   + +V+   +L+LDEPTN+LD+ ++
Sbjct:   12 EFAYKSRQILNNIKFEVKRGEVVSILGVNGAGKSTLLKCINKILKPKRGTILI-------DNFDIKNLDNLELAKKVGYVPQRAEGNYMTVFDAVLLGRKPHIKWEVSDRDIEITHKVLKLLNLEDYALRYTNELSGGELQKVIIARALVQEPQILLLDEPTNNLDLKNQ 174          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTG_ECOLI (Putrescine transport ATP-binding protein potG OS=Escherichia coli (strain K12) GN=potG PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYF------------------EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+ +   +  +LTI +GE  A++G +GCGKSTLL+++ G E+P  G+++L   + + +P Y                   EQN A  L  DK     +A      R++++ GL+    F      RK   LSGG++ R+A  + + K   LL+LDEP   LD
Sbjct:   29 YDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEF----AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_MYCMS (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma mycoides subsp. mycoides SC GN=potA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 45/160 (28.12%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y+ +++    +  ++ GE   ++GP+GCGK+T+LK+I G +KP  GE+L  + N++P    + Q        T+ ++ A        D++   L     K D+++R                 K+  LSGG+K R+A  + +V    +L+LDEP   LD+
Sbjct:   15 YDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQF------NTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRIAIARALVMKPKVLLLDEPMAALDV 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAEIN (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae GN=potA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLL---GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y    + N  NLTI  GE   I+GP+GCGK+T+L+L+ GLE+   G ++L   ++     E+       Q+ AL    T+ E VA      ++  ++IK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YGSNTIINDFNLTINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAW (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain MW2) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPAKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAS (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain MSSA476) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPAKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAB (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 50/158 (31.65%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGGE  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQLLTKLPSEVSGGELQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
EF3_CANAL2.034e-1331.94Elongation factor 3 OS=Candida albicans GN=TEF3 PE... [more]
CCMA_METCA2.034e-1333.55Cytochrome c biogenesis ATP-binding export protein... [more]
ZNUC_AERHH2.656e-1333.56Zinc import ATP-binding protein znuC OS=Aeromonas ... [more]
Y089_METJA2.656e-1330.59Uncharacterized ABC transporter ATP-binding protei... [more]
POTG_ECOLI2.656e-1332.10Putrescine transport ATP-binding protein potG OS=E... [more]
POTA_MYCMS2.656e-1328.13Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAEIN2.656e-1333.33Spermidine/putrescine import ATP-binding protein p... [more]
OPPF2_STAAW2.656e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
OPPF2_STAAS2.656e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
OPPF2_STAAB2.656e-1331.65Putative oligopeptide transport ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
back to top