CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_MYCCT (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=potA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 45/160 (28.12%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y+ +++    +  ++ GE   ++GP+GCGK+T+LK+I G +KP  GE+L  + N++P    + Q        T+ ++ A        D++   L     K D+++R                 K+  LSGG+K R+A  + +V    +L+LDEP   LD+
Sbjct:   15 YDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQF------NTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDV 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_MESFL (Spermidine/putrescine import ATP-binding protein potA OS=Mesoplasma florum GN=potA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            Y+ +++    +L I+ GE   ++GP+GCGK+T L+++ G EKP  G+++    ++LP    + Q        T+ ++ A        D+I   L     K D+L                 DR ++ LSGG+K R+A  + +V    +L+LDEP   LD+  ++
Sbjct:   15 YDGKVVLKGIDLNIKEGEFITLLGPSGCGKTTTLRIVAGFEKPNSGQIMFEGKDLLPIPINKRQF------NTIFQSYALFPHLNVFDNIAFGLRTKKTKKDILQREVLKQIRQVGLEGFEDRNINDLSGGQKQRVAIARALVMKPKVLLLDEPLAALDVQLRQ 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAC (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain COL) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAA8 (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain NCTC 8325) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAA3 (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain USA300) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ELF1_SCHPO (mRNA export factor elf1 OS=Schizosaccharomyces pombe GN=elf1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 46/147 (31.29%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y  RLL +  NL + RG +  ++G NGCGKSTLL+ I   +            + +   F  +  +  D    +L+ VA+      ++    +    L    F A+M +  V+ LSGG K +L   + M++ + +L+LDEPTNHLD+
Sbjct:  454 YGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVEN-----FPSPDEVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAADALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLDV 595          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3_PNECA (Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y  ++L NR +L ++RG +  + GPNG GKSTLL+ I   +       L G    L   + ++  +  +   +V + +A         + + I  LL   +F  DML   +S LSGG K +LA  + M++   +L+LDEPTNHLD+
Sbjct:  439 YGAKILLNRTSLNLKRGYRYGLCGPNGSGKSTLLRSIFNGQ-------LEGFPTELKTAYVEHDIDDTESKTSVFDFIANDPSVVVKNKQEVISSLLEH-SFTEDMLSIPISNLSGGWKMKLALVRAMLRQVDILLLDEPTNHLDV 576          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_VIBPA (Zinc import ATP-binding protein znuC OS=Vibrio parahaemolyticus GN=znuC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 43/146 (29.45%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            ++DR + +  ++ +E+G+ T +IGPNG GKSTL+K+I+GL+KP  G+++  +      +P   + N +  L++ +  L    + ++   +D ++ L+G       ++   +  LSGGE  R+   + +++   LLVLDEP   +D+
Sbjct:   14 FDDRRVLDNISMELEKGKITTLIGPNGAGKSTLVKVILGLQKPTSGKLVKAKKLKIGYVPQKLKLNDSLPLNVIR-FLNLAGKYSKQECLDALR-LVG----AEHLIKSNMHRLSGGENQRVLLARALLQRPDLLVLDEPAQGVDV 153          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: OPPF2_STAAR (Putative oligopeptide transport ATP-binding protein oppF2 OS=Staphylococcus aureus (strain MRSA252) GN=oppF2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 FGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDD-------IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY  + ++    N+TI  GE   I+G +GCGKSTL  L++GL KP  GE+ L ++ VLP +  Q+   + + D T+  ++ EA   +R + D       +   L      A +L +  S +SGG+  R    + ++    +L+ DE T++LD+ +++
Sbjct:    9 FGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIYLSDNAVLPIF--QHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLIQHLSTFELNAQLLTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQ 164          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: MALK_MANSM (Maltose/maltodextrin import ATP-binding protein malK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=malK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPN-----YFEQNQAEALDLDKT-------VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y D  +    NL I  GE    +GP+GCGKSTLL++I GLE    GE+ +GE   ++V P+        Q+ A    LD          L  V +   D R++ +  +L      A +LDRK   LSGG++ R+A  + +V    + +LDEP ++LD
Sbjct:   13 YGDVHISKDINLEINEGEFVVFVGPSGCGKSTLLRMIAGLEDITTGELYIGEKLMNDVEPSKRGIGMVFQSYALYPHLDVADNMSFGLKLAGVKKNERDQRVNQVAEILQ----LAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEPLSNLD 165          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
POTA_MYCCT3.469e-1328.13Spermidine/putrescine import ATP-binding protein p... [more]
POTA_MESFL4.531e-1328.05Spermidine/putrescine import ATP-binding protein p... [more]
OPPF2_STAAC4.531e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
OPPF2_STAA84.531e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
OPPF2_STAA34.531e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
ELF1_SCHPO4.531e-1331.29mRNA export factor elf1 OS=Schizosaccharomyces pom... [more]
EF3_PNECA4.531e-1333.56Elongation factor 3 OS=Pneumocystis carinii GN=TEF... [more]
ZNUC_VIBPA5.917e-1329.45Zinc import ATP-binding protein znuC OS=Vibrio par... [more]
OPPF2_STAAR5.917e-1331.01Putative oligopeptide transport ATP-binding protei... [more]
MALK_MANSM5.917e-1334.39Maltose/maltodextrin import ATP-binding protein ma... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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