CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB1_RHILO (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Rhizobium loti GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQ-------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            + D+++ +  +L +  G+  A+IG +GCGKSTLL+L+ GL++P  G + LG     H+     F++       +  + +++  T +    +A +  R  DI G +G     AD  D   S+LSGG+K R+A  + +V    +L LDEP   LD
Sbjct:   40 FGDKIVLDGIDLDVPAGQFVAVIGKSGCGKSTLLRLLAGLDRPTSGSLTLGAEEEGHSRTRFMFQEPRLLPWASVVKNVEIGLTGIAAGQDARQ--RALDILGEVG----LADRADEWPSVLSGGQKQRVALARALVGHPQILALDEPLGALD 186          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y4OS_RHISN (Uncharacterized ABC transporter ATP-binding protein y4oS OS=Rhizobium sp. (strain NGR234) GN=NGR_a02170 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   55 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            IE GE   ++GP+GCGKSTLL+++ GLE+  GG++L+G   +     ++       Q  AL    TV E +  A +         D R+D    +LG       +LDR    LSGG++ R+A  + +V+   + + DEP ++LD
Sbjct:   42 IEDGEFVVLVGPSGCGKSTLLRMLAGLEEISGGDLLMGADVINDRPAKERDMAIVFQNYALYPHMTVAENMGFALKLRKRPRAEIDERVDKAAAILG----LGKLLDRYPRALSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 181          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_RALME (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ssuB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 54/144 (37.50%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEALDLD-KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y  R + +  NL    GE  AI+G +GCGKSTLL+L+ GLE    G V L G+    P+       +A  L  K VL+ VA      R  D   LL +    AD  +   + LSGG++ R+A  + +V    LL+LDEP   LD
Sbjct:   49 YNGREVLHGVNLRAAPGEFVAIVGRSGCGKSTLLRLVAGLESADAGAVALDGQPGGTPSSVRVMFQDARLLPWKRVLDNVAIGLPRERHADAAALLDQVGL-ADRANEWPARLSGGQRQRVALARALVHHPRLLLLDEPLGALD 191          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_RALEJ (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia eutropha (strain JMP134) GN=ssuB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 52/148 (35.14%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD------KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y+ R + +R  LT   GE  AI+G +GCGKSTLL+L+ GLE    G + L   +  P    Q     +  D      K VLE VA      R ++   +L +   + D  D   + LSGG++ R+A  + +V    LL+LDEP   LD
Sbjct:   45 YDGREVLHRIELTAAPGEFVAIVGRSGCGKSTLLRLVAGLECADEGAITL---DAQPARTLQQDIRVMFQDSRLLPWKRVLENVALGLPRERREEAAAVLAQVGLR-DRADAWPARLSGGQRQRVALARSLVHHPRLLLLDEPLGALD 188          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB3_RHOSR (Aliphatic sulfonates import ATP-binding protein ssuB 3 OS=Rhodococcus sp. (strain RHA1) GN=ssuB3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 1
Query:    1 RGEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            R  FG  D+ + +  +L I RGE   ++GP+G GK+TLL+L+ GLE P GG+VL+     +       Q   L   K VL  V+   +  ++  D+ +  L   N  AD      + LSGGE  R+A  + +V+   LL+LDEP   LD
Sbjct:   38 RKSFG--DKTVLSGIDLEITRGEFVVLLGPSGTGKTTLLRLLSGLEPPDGGDVLVPRQRTV-----VYQEPRLIPSKRVLANVSVGQKRAQLTRDNARRALAEVNL-ADKERAWPATLSGGEAQRVALARALVREPELLLLDEPFAALD 178          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_PARUW (Spermidine/putrescine import ATP-binding protein potA OS=Protochlamydia amoebophila (strain UWE25) GN=potA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP------NYFEQNQAEALDLDKTVLET------VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + D +  N  +  I +GE  +++GP+GCGK+TLL+++ G EKP  G +LL   ++  LP      N   QN   AL    T+ E       +A+ +E     +++ +LG    K +   +K   +SGG+K R+A  + +V    +L+LDEP   LD+  ++
Sbjct:   14 FADSIALNDVSFAINKGEFFSLLGPSGCGKTTLLRILAGFEKPDQGRILLDGQDITKLPANKRPINTVFQNY--ALFPHLTIWENIAFGLRIAQRSETEIKREVEQMLGLIQMK-EHGHKKPDQISGGQKQRVAIARALVNHPRILLLDEPLAALDLKLRQ 171          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAEI8 (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae (strain 86-028NP) GN=potA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLL---GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            Y    + N  NL I  GE   I+GP+GCGK+T+L+L+ GLE+   G ++L   ++     E+       Q+ AL    T+ E VA      ++  ++IK  +    R     +M DRK + LSGG++ R+A  + +V    +L+LDE  + LD
Sbjct:   20 YGSNTIINDFNLAINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_SPICI (Spermidine/putrescine import ATP-binding protein potA OS=Spiroplasma citri GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            Y+ +++    NL I+ GE   ++GP+GCGK+T L++I G E+P  GE+L LG+       H    N   QN   AL    TV + +A   +         +  +     L+G   F+    D+ V  LSGG++ R+A  + ++    +L+LDEP   LD+
Sbjct:   15 YDGKVVLKGINLNIKEGEFVTLLGPSGCGKTTTLRIIAGFEQPNSGELLFLGKDYLKTPVHKREVNTVFQNY--ALFPHLTVFDNIAYGLKVKRNKYDVIETEVKKFLQLVGLEGFE----DKSVEQLSGGQRQRVALARALINKPRVLLLDEPMAALDV 168          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_CLOD6 (Spermidine/putrescine import ATP-binding protein potA OS=Clostridium difficile (strain 630) GN=potA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            YE+  + +  NL I++ E   ++GP+GCGK+T LK+I G E    G+VL    E N LP Y  Q     Q  AL     V E VA   +         D ++ ++  L+    F+     R+V  LSGG++ R+A  + +V    +L+LDEP   LD+  ++
Sbjct:   15 YEELTVLDNFNLDIKKNEFLTLLGPSGCGKTTTLKIIAGFEYADDGKVLFEGKEINNLPPYERQVNTVFQKYALFPHMDVYENVAFGLKIKKTPKDVIDAKVKEVLKLVALEGFER----RQVESLSGGQQQRIAIARALVNEPKVLLLDEPLGALDLKLRQ 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: LOLD_PSEA6 (Lipoprotein-releasing system ATP-binding protein lolD OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=lolD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQN-----QAEALDLDKTVLETV------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            G E   + N  NL++   E+ AIIG +G GKSTLL L+  L++P  G VL  +H++          +  Q+     QA  L  + + LE V      A    +  +   + +L +    A  L  + S+LSGGE+ R+A  + +V    L++ DEPT +LD  + E
Sbjct:   17 GKESVQILNNVNLSVNTSEQLAIIGSSGSGKSTLLHLLGALDQPTSGTVLFEQHDIFSFTSAEQAKFRNQSLGFVYQAHHLLPEFSALENVAMPRLIANEKREEAMHHAQNMLEKVGL-AHRLTHRPSMLSGGERQRVAIARALVNQPKLVLADEPTGNLDTKTGE 181          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
SSUB1_RHILO7.728e-1332.03Aliphatic sulfonates import ATP-binding protein ss... [more]
Y4OS_RHISN1.009e-1233.33Uncharacterized ABC transporter ATP-binding protei... [more]
SSUB_RALME1.009e-1237.50Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB_RALEJ1.009e-1235.14Aliphatic sulfonates import ATP-binding protein ss... [more]
SSUB3_RHOSR1.009e-1235.57Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_PARUW1.009e-1231.06Spermidine/putrescine import ATP-binding protein p... [more]
POTA_HAEI81.009e-1232.68Spermidine/putrescine import ATP-binding protein p... [more]
POTA_SPICI1.318e-1231.25Spermidine/putrescine import ATP-binding protein p... [more]
POTA_CLOD61.318e-1232.72Spermidine/putrescine import ATP-binding protein p... [more]
LOLD_PSEA61.318e-1231.33Lipoprotein-releasing system ATP-binding protein l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
back to top