CX296608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB1_RHILO (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Rhizobium loti GN=ssuB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13 Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQ-------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 + D+++ + +L + G+ A+IG +GCGKSTLL+L+ GL++P G + LG H+ F++ + + +++ T + +A + R DI G +G AD D S+LSGG+K R+A + +V +L LDEP LD Sbjct: 40 FGDKIVLDGIDLDVPAGQFVAVIGKSGCGKSTLLRLLAGLDRPTSGSLTLGAEEEGHSRTRFMFQEPRLLPWASVVKNVEIGLTGIAAGQDARQ--RALDILGEVG----LADRADEWPSVLSGGQKQRVALARALVGHPQILALDEPLGALD 186
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: Y4OS_RHISN (Uncharacterized ABC transporter ATP-binding protein y4oS OS=Rhizobium sp. (strain NGR234) GN=NGR_a02170 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 1 Query: 55 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 IE GE ++GP+GCGKSTLL+++ GLE+ GG++L+G + ++ Q AL TV E + A + D R+D +LG +LDR LSGG++ R+A + +V+ + + DEP ++LD Sbjct: 42 IEDGEFVVLVGPSGCGKSTLLRMLAGLEEISGGDLLMGADVINDRPAKERDMAIVFQNYALYPHMTVAENMGFALKLRKRPRAEIDERVDKAAAILG----LGKLLDRYPRALSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD 181
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_RALME (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ssuB PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 54/144 (37.50%), Postives = 73/144 (50.69%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEALDLD-KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 Y R + + NL GE AI+G +GCGKSTLL+L+ GLE G V L G+ P+ +A L K VL+ VA R D LL + AD + + LSGG++ R+A + +V LL+LDEP LD Sbjct: 49 YNGREVLHGVNLRAAPGEFVAIVGRSGCGKSTLLRLVAGLESADAGAVALDGQPGGTPSSVRVMFQDARLLPWKRVLDNVAIGLPRERHADAAALLDQVGL-ADRANEWPARLSGGQRQRVALARALVHHPRLLLLDEPLGALD 191
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB_RALEJ (Aliphatic sulfonates import ATP-binding protein ssuB OS=Ralstonia eutropha (strain JMP134) GN=ssuB PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 52/148 (35.14%), Postives = 74/148 (50.00%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD------KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 Y+ R + +R LT GE AI+G +GCGKSTLL+L+ GLE G + L + P Q + D K VLE VA R ++ +L + + D D + LSGG++ R+A + +V LL+LDEP LD Sbjct: 45 YDGREVLHRIELTAAPGEFVAIVGRSGCGKSTLLRLVAGLECADEGAITL---DAQPARTLQQDIRVMFQDSRLLPWKRVLENVALGLPRERREEAAAVLAQVGLR-DRADAWPARLSGGQRQRVALARSLVHHPRLLLLDEPLGALD 188
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: SSUB3_RHOSR (Aliphatic sulfonates import ATP-binding protein ssuB 3 OS=Rhodococcus sp. (strain RHA1) GN=ssuB3 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 1 Query: 1 RGEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 R FG D+ + + +L I RGE ++GP+G GK+TLL+L+ GLE P GG+VL+ + Q L K VL V+ + ++ D+ + L N AD + LSGGE R+A + +V+ LL+LDEP LD Sbjct: 38 RKSFG--DKTVLSGIDLEITRGEFVVLLGPSGTGKTTLLRLLSGLEPPDGGDVLVPRQRTV-----VYQEPRLIPSKRVLANVSVGQKRAQLTRDNARRALAEVNL-ADKERAWPATLSGGEAQRVALARALVREPELLLLDEPFAALD 178
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_PARUW (Spermidine/putrescine import ATP-binding protein potA OS=Protochlamydia amoebophila (strain UWE25) GN=potA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP------NYFEQNQAEALDLDKTVLET------VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 + D + N + I +GE +++GP+GCGK+TLL+++ G EKP G +LL ++ LP N QN AL T+ E +A+ +E +++ +LG K + +K +SGG+K R+A + +V +L+LDEP LD+ ++ Sbjct: 14 FADSIALNDVSFAINKGEFFSLLGPSGCGKTTLLRILAGFEKPDQGRILLDGQDITKLPANKRPINTVFQNY--ALFPHLTIWENIAFGLRIAQRSETEIKREVEQMLGLIQMK-EHGHKKPDQISGGQKQRVAIARALVNHPRILLLDEPLAALDLKLRQ 171
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_HAEI8 (Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus influenzae (strain 86-028NP) GN=potA PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12 Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRI--DDIKGLL---GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441 Y + N NL I GE I+GP+GCGK+T+L+L+ GLE+ G ++L ++ E+ Q+ AL T+ E VA ++ ++IK + R +M DRK + LSGG++ R+A + +V +L+LDE + LD Sbjct: 20 YGSNTIINDFNLAINNGEFVTILGPSGCGKTTVLRLLAGLEELDSGSIILDGEDITNVPAEKRHINTVFQSYALFPHMTIFENVAFGLRMQKVPNEEIKPRVLEALRMVQLEEMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESLSALD 172
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_SPICI (Spermidine/putrescine import ATP-binding protein potA OS=Spiroplasma citri GN=potA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12 Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444 Y+ +++ NL I+ GE ++GP+GCGK+T L++I G E+P GE+L LG+ H N QN AL TV + +A + + + L+G F+ D+ V LSGG++ R+A + ++ +L+LDEP LD+ Sbjct: 15 YDGKVVLKGINLNIKEGEFVTLLGPSGCGKTTTLRIIAGFEQPNSGELLFLGKDYLKTPVHKREVNTVFQNY--ALFPHLTVFDNIAYGLKVKRNKYDVIETEVKKFLQLVGLEGFE----DKSVEQLSGGQRQRVALARALINKPRVLLLDEPMAALDV 168
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: POTA_CLOD6 (Spermidine/putrescine import ATP-binding protein potA OS=Clostridium difficile (strain 630) GN=potA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12 Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1 Query: 16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 YE+ + + NL I++ E ++GP+GCGK+T LK+I G E G+VL E N LP Y Q Q AL V E VA + D ++ ++ L+ F+ R+V LSGG++ R+A + +V +L+LDEP LD+ ++ Sbjct: 15 YEELTVLDNFNLDIKKNEFLTLLGPSGCGKTTTLKIIAGFEYADDGKVLFEGKEINNLPPYERQVNTVFQKYALFPHMDVYENVAFGLKIKKTPKDVIDAKVKEVLKLVALEGFER----RQVESLSGGQQQRIAIARALVNEPKVLLLDEPLGALDLKLRQ 172
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: LOLD_PSEA6 (Lipoprotein-releasing system ATP-binding protein lolD OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=lolD PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12 Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNYFEQN-----QAEALDLDKTVLETV------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456 G E + N NL++ E+ AIIG +G GKSTLL L+ L++P G VL +H++ + Q+ QA L + + LE V A + + + +L + A L + S+LSGGE+ R+A + +V L++ DEPT +LD + E Sbjct: 17 GKESVQILNNVNLSVNTSEQLAIIGSSGSGKSTLLHLLGALDQPTSGTVLFEQHDIFSFTSAEQAKFRNQSLGFVYQAHHLLPEFSALENVAMPRLIANEKREEAMHHAQNMLEKVGL-AHRLTHRPSMLSGGERQRVAIARALVNQPKLVLADEPTGNLDTKTGE 181 The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bpback to top |