CX296608

Overview
NameCX296608
Unique NameCX296608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: LOLD_MAGSA (Lipoprotein-releasing system ATP-binding protein lolD OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lolD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL--------LGE-----------------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            G +D  +   ANL I  GE  A++GP+G GKSTLL +   LE+P GGEV         LGE                 H++LP +   +  E + L + +       A +  ++    LLGR    A+  + +   LSGGE+ R+A C+ +     +L+ DEPT +LD
Sbjct:   18 GKDDLEVLKGANLEIRAGEIVALVGPSGAGKSTLLHIAGLLERPDGGEVFLAGNPAGALGEKERTQLRRLHLGFVYQYHHLLPEF---SAIENVVLPQMIAGVPQAKARERAME----LLGRMKL-AERAEHRPGQLSGGEQQRVAICRALANAPRVLLADEPTGNLD 177          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FHUC_BACSU (Iron(3+)-hydroxamate import ATP-binding protein fhuC OS=Bacillus subtilis GN=fhuC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 46/166 (27.71%), Postives = 79/166 (47.59%), Query Frame = 1
Query:   13 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI--------KGLLGRCNFK--------------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            GY DR++    N++I +G+ T +IGPNGCGKST+LK +  + +   G V L    +      +   + +  D  +L    EA     + ++        +   GR N +              A+  +R +  LSGG++ R+     + + + LL+LDEPT +LD+
Sbjct:   12 GYGDRVIVEDLNISIPKGKITTLIGPNGCGKSTILKTMSRIMRSHAGAVYLNGKAI-----HKMSTKDIAKDMAILPQTPEAPSGLTVHELVSYGRFPHQSGFGRLNDEDRRIIKWALEETGMAEYAERPIEALSGGQRQRVWIAMALAQGTELLLLDEPTTYLDL 172          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: EF3B_YEAST (Elongation factor 3B OS=Saccharomyces cerevisiae GN=HEF3 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            Y  ++L N+  L ++RG +  + GPNG GKSTL++ I             G+ +  P   E      ++  +    D +VL+ V       + D I   L    F  +M++  ++ LSGG K +LA  + ++K + +L+LDEPTNHLD  + E
Sbjct:  440 YGAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRSIAN-----------GQVDGFPTQDECRTVYVEHDIDNTHSDMSVLDFVYSGNVGTK-DVITSKLKEFGFSDEMIEMPIASLSGGWKMKLALARAVLKDADILLLDEPTNHLDTVNVE 580          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ZNUC_PHOLL (Zinc import ATP-binding protein znuC OS=Photorhabdus luminescens subsp. laumondii GN=znuC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   16 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 444
            + DR + N  +L ++RG    ++GPNG GKSTL+++++GL +P  G +   +  +   Y  Q     L LD T+  TV          +  DI   L R N  A +L + +  LSGGE  R+   + ++    LLVLDEPT  +D+
Sbjct:   14 FGDRRVLNNISLHLQRGNILTLLGPNGAGKSTLVRVVLGLIEPSSGTIEQTD-GLKIGYVPQK----LHLDPTLPLTVKRFMMLKPGVKSGDILPALERVN-AAHLLQQPMQKLSGGESQRVLLARALLNQPQLLVLDEPTQGVDV 153          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UGPC_JANSC (sn-glycerol-3-phosphate import ATP-binding protein ugpC OS=Jannaschia sp. (strain CCS1) GN=ugpC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   43 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH-------------NVLPNY-------FEQNQAEAL---DLDKTVL-ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ TI  GE T ++GP+GCGKSTLL+++ GLE+   GE+ +G+               V  NY         QN    L    +DK  + E V EAA+   ++             + LDR+ S LSGG++ R+A  + +V+   L + DEP ++LD
Sbjct:   23 SSFTIPDGELTVLVGPSGCGKSTLLRMVAGLEEITEGELSIGDRIVNDIDPADRNIAMVFQNYALYPHMSVAQNMGYGLKNRGMDKAAISEKVREAADMLNLN-------------EFLDRRPSQLSGGQRQRVAMGRAIVREPDLFLFDEPLSNLD 166          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: UGPC2_AGRT5 (sn-glycerol-3-phosphate import ATP-binding protein ugpC 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ugpC2 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 45/147 (30.61%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   46 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH-------------NVLPNY-FEQNQAEALDLDKTV-LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            +L+ + GE   I+GP+GCGKSTLL++I GLE+   GE+ +G                V  NY    + + A ++   + +  V +A    RI++   ++G     +D L+RK + LSGG++ R+A  + +++   + + DEP ++LD
Sbjct:   23 DLSFDSGEFVVILGPSGCGKSTLLRMIAGLEEITSGEIAIGGRVVNTLEPRERGCAMVFQNYALYPHMSVAANIGYALKVAGVPKAERQRRIEETAKIVG----LSDYLERKPAALSGGQRQRVAMARAIIREPAVFLFDEPLSNLD 165          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: LOLD_SHEDO (Lipoprotein-releasing system ATP-binding protein lolD OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=lolD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   31 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK-------------TVLETVAEAA------EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            + +  NLT+ RGE+ AI+G +G GKSTLL ++  LE P  G VLL   N L     + QA+  + D              + LE VA  A      +   + + K LL R       L    S LSGGE+ R+A  + ++    L++ DEPT +LD  S E
Sbjct:   27 VLHEVNLTVHRGEQLAIVGSSGSGKSTLLHIMGTLESPTSGTVLLEGEN-LHQLSSKRQAQIRNQDLGFIYQFHHLLPEFSALENVAMPAFIQGKNKAQTLAEAKALLERVGL-GHRLTHLPSQLSGGERQRVAIARALINKPKLVLADEPTGNLDAVSGE 185          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: FBPC_HAES1 (Fe(3+) ions import ATP-binding protein fbpC OS=Haemophilus somnus (strain 129Pt) GN=fbpC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN------QAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 441
            ++ +  NL+I+RG    ++GP+GCGK+T+L+L+ GLE P  GE+ +   +V  +  +        Q+ AL    ++ + V           D R   +K  L   +  A   DR V  +SGG++ R+A  + +V    +L+ DEP ++LD
Sbjct:   19 VVIDNLNLSIKRGSMVTLLGPSGCGKTTVLRLVAGLESPTEGEIFIDGEDVTKSSIQNRDICIVFQSYALFPHMSIGDNVGYGLKMQGVGSDERKQRVKEALELVDL-AGFEDRYVDQISGGQQQRVALARALVLKPKVLLFDEPLSNLD 167          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: BMRA_BACSU (Multidrug resistance ABC transporter ATP-binding/permease protein bmrA OS=Bacillus subtilis GN=bmrA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 51/174 (29.31%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 RGEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            R  FGY+ D+L+    +  IE G+ TAI+GP+G GK+TL KL+     P  G + LG+  V                     +     +N    L+ D T  E    A   + ++ IK L  +  F  ++ +R + +LSGG++ R+A  + +++  ++L+LDE T+ LD  S++
Sbjct:  345 RVSFGYKPDQLILKEVSAVIEAGKVTAIVGPSGGGKTTLFKLLERFYSPTAGTIRLGDEPVDTYSLESWREHIGYVSQESPLMSGTIRENICYGLERDVTDAEIEKAAEMAYALNFIKELPNQ--FDTEVGERGI-MLSGGQRQRIAIARALLRNPSILMLDEATSSLDSQSEK 515          
BLAST of CX296608 vs. ExPASy Swiss-Prot
Match: ADCC_BACSU (Probable zinc transport system ATP-binding protein adcC OS=Bacillus subtilis GN=adcC PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   10 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQNQAEALD--LDKTVLETVAEAAED---W--RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 456
            FGY    + ++ +L IE GE   I GPNG  KSTL+K+++G+ KP  G V + + N     L   +   Q  + +     TVLE V         W  R+++   L      K     D+  RK+  LSGG+K ++   + +     LL+LDEPT  +D  S++
Sbjct:   11 FGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKRNTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNEEDHLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYDSRK 174          
The following BLAST results are available for this feature:
BLAST of CX296608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
LOLD_MAGSA1.318e-1232.14Lipoprotein-releasing system ATP-binding protein l... [more]
FHUC_BACSU1.318e-1227.71Iron(3+)-hydroxamate import ATP-binding protein fh... [more]
EF3B_YEAST1.318e-1230.72Elongation factor 3B OS=Saccharomyces cerevisiae G... [more]
ZNUC_PHOLL1.722e-1233.56Zinc import ATP-binding protein znuC OS=Photorhabd... [more]
UGPC_JANSC1.722e-1232.48sn-glycerol-3-phosphate import ATP-binding protein... [more]
UGPC2_AGRT51.722e-1230.61sn-glycerol-3-phosphate import ATP-binding protein... [more]
LOLD_SHEDO1.722e-1234.16Lipoprotein-releasing system ATP-binding protein l... [more]
FBPC_HAES11.722e-1230.00Fe(3+) ions import ATP-binding protein fbpC OS=Hae... [more]
BMRA_BACSU1.722e-1229.31Multidrug resistance ABC transporter ATP-binding/p... [more]
ADCC_BACSU1.722e-1231.71Probable zinc transport system ATP-binding protein... [more]

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Properties
Property NameValue
Genbank descriptionC05146G08SK FerrChloL1 Citrus clementina cDNA clone C05146G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296608 ID=CX296608; Name=CX296608; organism=Citrus clementina; type=EST; length=457bp
CGAGGGGAATTTGGATACGAGGATAGACTTCTGTTTAATCGAGCAAATCT
CACAATTGAAAGGGGAGAGAAAACTGCCATCATTGGCCCAAATGGTTGTG
GTAAGAGTACTTTGCTGAAATTGATAATGGGTTTAGAGAAGCCAAGAGGA
GGTGAAGTTCTGCTTGGTGAGCATAATGTCCTACCAAACTATTTTGAGCA
GAATCAGGCTGAGGCACTTGATTTGGACAAAACAGTACTTGAGACAGTAG
CAGAAGCTGCAGAGGACTGGAGAATTGATGATATAAAGGGCCTCCTTGGT
CGTTGTAATTTCAAAGCTGACATGCTTGATAGAAAGGTTTCCCTTTTGAG
TGGTGGTGAGAAGGCACGTCTTGCATTTTGCAAATTCATGGTAAAACCAT
CAACTCTTCTAGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCA
AAAGAGA
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