CX296622

Overview
NameCX296622
Unique NameCX296622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 61/160 (38.12%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  195 TGAKGIKVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQDSQRSEK---EFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTG-KSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            T   G  + + E     + +  L   TN+FS +NI+GSG  G +YK  L DGT + VKR+++   + K   EF +E+A L  V++R+LV LLG+C+   E+LLVY++MP G+L   L    + G K + W +RL +A+  ARG  +LH   +   IHR++
Sbjct:  559 TSEVGDNIQMVEAGNMLISIQVLRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDL 718          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 48/147 (32.65%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  231 KSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQDS---QRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            + +    L+DL    + FS N ++G G  G +YKA  +DG    VK +  S   + + +EF   ++++ S+ ++N+  L+G+C  +   +LVY++  +GSL+  LH +DD  K + W  R+ IA+G A+   +LH  C+P ++H+NI
Sbjct:  398 RGVKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNI 544          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  144 RKKKDDDPEGNKWAKSLTGAKGIKVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRL-QDSQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            RK+K D PE +            K SL      +  L  +  AT +FSK N++G G  G ++K +L+DG+ + VKRL ++S +  +EF  E + +  +++RNLV +LGFCM  +E++LVY+ +PN SL   L      G+ +DW +R  I +G ARG  +LHH+    IIHR++
Sbjct:  292 RKRKTDPPEESP-----------KYSL------QYDLKTIEAATCTFSKCNMLGQGGFGEVFKGVLQDGSEIAVKRLSKESAQGVQEFQNETSLVAKLQHRNLVGVLGFCMEGEEKILVYEFVPNKSLDQFLFEPTKKGQ-LDWAKRYKIIVGTARGILYLHHDSPLKIIHRDL 447          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 60/151 (39.74%), Postives = 93/151 (61.59%), Query Frame = 3
Query:  213 KVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQD-SQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            K SL  + +     ++L  AT++F+ +  IG G  G +YK  L  GT + +KR Q+ S + EKEF+ E+  L  + +RNLV LLGFC  + E++LVY++M NG+L D +  +    + +D+  RL IA+G+A+G  +LH   NP I HR+I
Sbjct:  602 KASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNI--SVKLKEPLDFAMRLRIALGSAKGILYLHTEANPPIFHRDI 750          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  288 KNNIIGSGRTGTMYKALLEDGTPLMVKRL--QDSQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            + NIIG G  G +Y+  + +   + +KRL  + + RS+  F AE+ TLG +++R++V LLG+   K   LL+Y++MPNGSL +LLH     G  + W  R  +A+ AA+G  +LHH+C+PLI+HR++
Sbjct:  694 EENIIGKGGAGIVYRGSMPNNVDVAIKRLVGRGTGRSDHGFTAEIQTLGRIRHRHIVRLLGYVANKDTNLLLYEYMPNGSLGELLH--GSKGGHLQWETRHRVAVEAAKGLCYLHHDCSPLILHRDV 818          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 53/138 (38.41%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  252 LSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQDSQ-RSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            L +L  ATN   + N+IG G  G +Y+ +L DGT + VK L +++ ++EKEF  E+  +G V+++NLV LLG+C+    R+LVY  + NG+L   +H        + W  R+ I +G A+G A+LH    P ++HR+I
Sbjct:  144 LRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDI 281          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 65/180 (36.11%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  129 RRMSMRKKKDDDPEGNKWAKSLTGAKGIKVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQD--SQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            RR++M +  D   EG      L G   ++   F          +L  AT+ FS  +I+G+G  G +Y+    DGT + VKRL+D        +F  E+  +    +RNL+ L+G+C +  ERLLVY +M NGS+   L        ++DW  R  IAIGAARG  +LH  C+P IIHR++
Sbjct:  263 RRLTMLRISDKQEEG------LLGLGNLRSFTFR---------ELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVASRLKAKP----ALDWNTRKKIAIGAARGLFYLHEQCDPKIIHRDV 423          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 3
Query:   96 LVVGIVMFFYFRRMSMRKKKDDDPEGNKWAKSLTGAKGIKVSLFEK--------SITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVK-RLQDSQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            L VGI+ F  +R  S+        EG  + K+   A  I  SL  K        S+    L  + +AT  +    +IG G  G++Y+  L+DG  + VK R   S +  +EF  E+  L ++++ NLVPLLG+C    +++LVY  M NGSL D L+      K +DWP RL IA+GAARG A+LH      +IHR++
Sbjct:  536 LAVGILFFCRYRHKSITL------EG--FGKTYPMATNIIFSLPSKDDFFIKSVSVKPFTLEYIEQATEQYK--TLIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDV 723          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  213 KVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQDSQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            +V+L++K      + D++K   + +  N+IG+G +G +Y+  +  G  L VK++   + S   F +E+ TLGS+++RN+V LLG+C  +  +LL Y ++PNGSL   LH A   G  VDW  R  + +G A   A+LHH+C P IIH ++
Sbjct:  742 EVTLYQK--LDFSIDDIVK---NLTSANVIGTGSSGVVYRITIPSGESLAVKKMWSKEESGA-FNSEIKTLGSIRHRNIVRLLGWCSNRNLKLLFYDYLPNGSLSSRLHGA-GKGGCVDWEARYDVVLGVAHALAYLHHDCLPTIIHGDV 884          
BLAST of CX296622 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 69/194 (35.57%), Postives = 105/194 (54.12%), Query Frame = 3
Query:   99 VVGIVMFFYF----RRMSMRKKKDDDPEGNKWAKSLTGAKGIKVSLFEKSITKMRLSDLMKATNSFSKNNIIGSGRTGTMYKALLEDGTPLMVKRLQ--DSQRSEKEFVAEMATLGSVKNRNLVPLLGFCMAKKERLLVYKHMPNGSLYDLLHPADDTGKSVDWPRRLXIAIGAARGFAWLHHNCNPLIIHRNI 662
            VVGI + + F    R+++ +KK      G    + L    G    + EK+I      +L KAT +FS N I+G G  GT+YK +L DG  + VK+ +  D  + E EF+ E+  L  + +RN+V LLG C+  K  +LVY+ +PNG+L++ LH   D      W  RL IAI  A   ++LH + +  I HR++
Sbjct:  387 VVGIYLLYKFIKKQRKLNQKKKFFKRNGGLLLQQQLISTVG----MVEKTIV-FSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLE-EFINEVVILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDENIMATWNIRLRIAIDIAGALSYLHSSASSPIYHRDV 574          
The following BLAST results are available for this feature:
BLAST of CX296622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
TMK1_ARATH3.886e-2338.13Probable receptor protein kinase TMK1 OS=Arabidops... [more]
SRF4_ARATH3.886e-2332.65Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
CRK33_ARATH5.075e-2337.36Putative cysteine-rich receptor-like protein kinas... [more]
Y1684_ARATH6.629e-2339.74Probable LRR receptor-like serine/threonine-protei... [more]
CLV1_ARATH6.629e-2340.94Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
Y1154_ARATH8.657e-2338.41Probable serine/threonine-protein kinase At1g01540... [more]
Y2239_ARATH1.131e-2236.11Probable LRR receptor-like serine/threonine-protei... [more]
NORK_MEDTR1.131e-2236.36Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y4265_ARATH1.477e-2237.33Probable LRR receptor-like serine/threonine-protei... [more]
WAKLH_ARATH1.477e-2235.57Wall-associated receptor kinase-like 9 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC05146H12SK FerrChloL1 Citrus clementina cDNA clone C05146H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296622 ID=CX296622; Name=CX296622; organism=Citrus clementina; type=EST; length=665bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGAACTTCAAGGGCCCTCACACT
GGAGTCATTGCTGGGGCAGCAATTGGCGGGGTGACTTTCGCAGCATTGGT
TGTGGGTATTGTTATGTTCTTCTATTTCCGTAGAATGTCTATGAGGAAGA
AGAAGGATGATGATCCTGAAGGAAACAAATGGGCGAAGAGCTTGACAGGA
GCCAAAGGCATTAAGGTTTCCTTGTTTGAGAAGTCAATTACTAAAATGAG
ATTAAGTGATCTCATGAAGGCTACCAACAGCTTCAGCAAAAACAATATTA
TTGGGTCAGGAAGAACTGGGACAATGTACAAAGCATTGCTTGAAGATGGC
ACGCCACTTATGGTAAAGAGGTTGCAGGATTCACAACGTTCTGAGAAAGA
ATTTGTGGCTGAGATGGCTACTCTGGGAAGTGTGAAAAATCGTAACTTAG
TTCCGCTTTTAGGTTTTTGCATGGCTAAGAAGGAGAGGCTTTTGGTTTAC
AAGCACATGCCAAATGGTAGCCTTTATGATCTTTTACATCCCGCTGATGA
CACTGGCAAGAGTGTGGATTGGCCACGGAGGCTCNAAATAGCTATAGGGG
CAGCTAGAGGATTTGCCTGGCTACATCATAACTGCAATCCTCTTATTATT
CACCGAAATATTAGC
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