CX296628

Overview
NameCX296628
Unique NameCX296628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 49/156 (31.41%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  242 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 703
            G IG  L +RL+PFG  ++        H ++            +  +L  E G    ED+ +     DV+V  + L ++T G+ NK  +  +KKG L+VN ARG +++ +A+   +ESGH+GG   DV   +P   + P     N  +TPH  G T
Sbjct:  206 GRIGKLLLQRLKPFGCNLLY-------HDRLQ-----------MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 343          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_SHIFL (D-3-phosphoglycerate dehydrogenase OS=Shigella flexneri GN=serA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  155 SMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 517
            +M+DVV   +  N  T  ++    +S MK GSLL+N +RG ++D  A+   L S HL G  IDV  TEP   +D    P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct:  202 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_ECOLI (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli (strain K12) GN=serA PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  155 SMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 517
            +M+DVV   +  N  T  ++    +S MK GSLL+N +RG ++D  A+   L S HL G  IDV  TEP   +D    P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct:  202 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_ECOL6 (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O6 GN=serA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  155 SMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 517
            +M+DVV   +  N  T  ++    +S MK GSLL+N +RG ++D  A+   L S HL G  IDV  TEP   +D    P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct:  202 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_ECO57 (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O157:H7 GN=serA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = -3
Query:  155 SMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 517
            +M+DVV   +  N  T  ++    +S MK GSLL+N +RG ++D  A+   L S HL G  IDV  TEP   +D    P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct:  202 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 51/165 (30.91%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  209 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 703
            G IG  +A+R + FG++I+   R+    ++               ++L  E    E++ K    +D VV  + L K+T  ++ +  L  MK  ++LVNIARG ++D EA+   L+ G + G G+DV   EP+  N+ +   KNV++ PH+G  T  +   MA++V
Sbjct:  159 GRIGQAVARRAKGFGMRILYYSRTRKPEAE---------------EELKAEFKPLEELLK---ESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPY-YNEELFSLKNVILAPHIGSATFGAREGMAELV 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 49/165 (29.70%), Postives = 85/165 (51.52%), Query Frame = -3
Query:  209 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 703
            G IG  +A+R + FG++I+   R+     +    +  +      +D+L+ E             +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+   L  G + G G+DV   EP+  ++ +    NV++ PH+G  T  +   MA++V
Sbjct:  159 GRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-------------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPY-YHEELFSLDNVVLAPHIGSATYGAREGMAELV 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 47/176 (26.70%), Postives = 90/176 (51.14%), Query Frame = -3
Query:  179 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 706
            +G IG  +A+R + FG++I+     +    +       L V+   ++ L++E             +D V   + L ++T  ++ +  L  MK+ ++LVN +RG ++D +A+   L+ G + G G+DV   EP  P+DP+LK +NV++ PH    +  +   MA++V +  +    G
Sbjct:  155 MGRIGAAVARRAKGFGMRIL-----YYDSIRREDFEKELGVEYVPLEKLLEE-------------SDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAFKRG 312          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = -3
Query:  209 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 703
            G IG  LAKR + FG+KII   R+    ++                   +E G  + D       +D +   + L K+T  ++ +  L  MK  ++L+N +RG ++D  A+   L+ G + G G+DV   EP+  N+ + K KNV++ PH+G  T  +   MA++V
Sbjct:  159 GRIGQALAKRAKGFGMKIIYYSRTRKPEAE-------------------EEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPY-YNEELFKLKNVVLAPHIGSATHEAREGMAELV 304          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = -3
Query:  242 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVL-----ITPHVGGVT 706
            +G IG  + +RL+PF  K +     +  +  +S +  A             E GC    D+ +  +  DVV     L+++T G+ NK  +S MKKGS LVN ARG ++  E +A  L+SGHL G G DV + +P   + P+   KN       + PH+ G +
Sbjct:  173 VGRIGERVLRRLKPFDCKELL----YYDYQPLSAEKEA-------------EIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAMVPHMSGTS 317          
The following BLAST results are available for this feature:
BLAST of CX296628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
FDH_ARATH2.852e-1431.41Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
SERA_SHIFL4.865e-1436.51D-3-phosphoglycerate dehydrogenase OS=Shigella fle... [more]
SERA_ECOLI4.865e-1436.51D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
SERA_ECOL64.865e-1436.51D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
SERA_ECO574.865e-1436.51D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
GYAR_THEGJ4.865e-1430.91Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_THEON6.354e-1429.70Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_KORCO6.354e-1426.70Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_THELI8.298e-1429.52Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
FDH_NEUCR8.298e-1432.10Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]

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Properties
Property NameValue
Genbank descriptionC05801A06SK FerrChloL1 Citrus clementina cDNA clone C05801A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296628 ID=CX296628; Name=CX296628; organism=Citrus clementina; type=EST; length=708bp
ACAACAATTGAGGTATAACGAATTTGCTTGTAATGGTCAACTGTCAAACA
GACAATGGTGGCTCTTTCAAAATGCCAGGAAAGATTAGTCAAAGGATAGC
ATGCCTATTAGTTTTGGCCGATGAAACAGATTCCTTAGAGTTGAATCAAT
TCACAAACTCTAGTCCTGTCAAAGGAGTCCCCGCATGAAGTTGAAGGGCA
ACGTCGCCAACAACCTTAGCCATTGATCTGTAAGAATGTTCGGTAACACC
TCCAACATGAGGTGTGATTAAAACATTCTTGAACTTTAGAATTGGGTCAT
TGGGATCAAACGGCTCTGTCCAAGCAACATCAATGCCCAAGCCTCCCAAG
TGGCCAGATTCGAGGTAATGAGCAATGGCCTCATAGTCTAAAAGACCTCC
TCGAGCAATATTCACCAGAAGAGAACCCTTTTTCATTGAAGATAGAAATG
ACTTGTTTACAATGCCAGCCGTCTGCTTATTTAAACTCAGGCAACAAACA
ACCACGTCGGCCATGCTAGCAAACTTAAAAATATCTTCATGACAACCCTT
CTCATCAACCAAATCATCAATGATCCCGTTTTTTACTGCAAGTGCACTAG
ATTGGCAAGAAACTTGAGAATGTGAAGCCCAACTCCTTTTTGTGGCAATA
ATTTTCACACCAAATGGTCGCAAGCGCTTTGCCAATTCAACCCCAATATT
TCCAAGCC
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