CX296628

Overview
NameCX296628
Unique NameCX296628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = -3
Query:  242 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 703
            G IG  L +RL+PF   ++        H ++   S         +++ +  K   ED+ K  S  D+VV    L ++T G+ +K  ++ +KKG L+VN ARG ++D +A+     SGH+ G   DV + +P   + P     N  +TPH+ G T
Sbjct:  203 GRIGRLLLQRLKPFNCNLLY-------HDRLKMDSE--------LENQIGAK-FEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTT 340          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 54/174 (31.03%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  188 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 706
            LG IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct:  149 LGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 54/174 (31.03%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  188 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 706
            LG IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct:  149 LGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = -3
Query:  203 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 706
            +G IG  +A+  + FG++II   RS     +       L  +   ++DL+ E             +D++   L L  +T  ++ +S L  MKK ++LVN  RG ++D  A+   L  G +    +DV   EP +PN P+  FKNV++ PH    T  +   MA +  +
Sbjct:  159 MGRIGSRVAEIGKAFGMRIIYHSRSRKREIE-----KELGAEYRSLEDLLRE-------------SDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAE 308          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = -3
Query:  200 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDV 703
            G  G  L +RL+PF   ++        H ++            I  +L  E G    ED+       DVVV    L ++T G+ NK  ++ MKKG ++VN ARG ++D +A+A    SGH+ G G DV + +P   + P     N  +TPH+ G T  +    A  V D+
Sbjct:  199 GRYGRLLLQRLKPFNCNLLY-------HDRLQ-----------INPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDM 350          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = -3
Query:  242 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 703
            G IG  L +RL+PF   ++        H +V            I  +L  E G    ED+       DVVV  + L ++T G+ NK  ++ MKKG  +VN ARG ++D +A+A    SGH+ G G DV + +P   + P     N  +TPH  G T
Sbjct:  200 GRIGRLLLQRLKPFNCNLMY-------HDRVK-----------IDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTT 337          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 51/168 (30.36%), Postives = 84/168 (50.00%), Query Frame = -3
Query:  203 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 706
            LG IG ++ KR + FG+ II                  +A   G+  +LVD      DI +    AD +   + L  +T  I+ +  ++ MKK +++VN ARGGL+D +A+   L+ G +    +DV   EP   ++P+L   NV+ TPH G  TE + ++   +V +
Sbjct:  147 LGRIGQQVVKRAKAFGMNIIGYDPYIPKE---------VAESMGV--ELVD------DINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFEEEP-PKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAE 296          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: YPRB2_CORML (Uncharacterized protein in proB 3'region OS=Corynebacterium melassecola PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 50/155 (32.26%), Postives = 69/155 (44.52%), Query Frame = -3
Query:  239 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE 703
            G IGV L + L+PF VK IA   S                  G   +  DE    +      + ADV V  L L   T  IVN   L  MK  ++LVN+ RG L++ + +   L +G + G  +DV   EP   + P+ +  NV+ITPH     E
Sbjct:  135 GGIGVRLLEMLKPFNVKTIAVNNS------------------GRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVLVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEPLPDSHPLWEMDNVVITPHTANTNE 271          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 52/170 (30.59%), Postives = 80/170 (47.06%), Query Frame = -3
Query:  200 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDV 703
            G IG  L +RL+PF   ++        H ++            I  +L  E G    ED+       DV+V    L ++T G+ NK  ++ MKKG ++VN ARG ++D +A+A    SG + G G DV + +P   + P     N  +TPH+ G T  +    A  V D+
Sbjct:  198 GRIGRLLLQRLKPFNCNLLY-------HDRLK-----------IDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDM 349          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = -3
Query:  173 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 706
            LG IG  +A   +  G+K+                   LA    I  +  D+ GC   D+    S AD +   +    +TA ++N   L+ MK  + ++N +RGG++D EA+   +E+  +GG  +DV   EP      + +F NV++TPH+G  TE +  ++A  V +    +  G P
Sbjct:  175 LGKIGSHVAGVAKAMGMKL-------------------LAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPLG-ESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLP 333          
The following BLAST results are available for this feature:
BLAST of CX296628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
FDH_SOLTU1.084e-1330.52Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
SERA_MYCTU1.415e-1331.03D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO1.415e-1331.03D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_AERPE2.414e-1328.57Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
FDH_HORVU2.414e-1331.18Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH2_ORYSJ2.414e-1333.33Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
SERA_METJA3.153e-1330.36D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
YPRB2_CORML7.025e-1332.26Uncharacterized protein in proB 3'region OS=Coryne... [more]
FDH1_ORYSJ9.175e-1330.59Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
SERA_SYNY31.198e-1227.93D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]

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Properties
Property NameValue
Genbank descriptionC05801A06SK FerrChloL1 Citrus clementina cDNA clone C05801A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296628 ID=CX296628; Name=CX296628; organism=Citrus clementina; type=EST; length=708bp
ACAACAATTGAGGTATAACGAATTTGCTTGTAATGGTCAACTGTCAAACA
GACAATGGTGGCTCTTTCAAAATGCCAGGAAAGATTAGTCAAAGGATAGC
ATGCCTATTAGTTTTGGCCGATGAAACAGATTCCTTAGAGTTGAATCAAT
TCACAAACTCTAGTCCTGTCAAAGGAGTCCCCGCATGAAGTTGAAGGGCA
ACGTCGCCAACAACCTTAGCCATTGATCTGTAAGAATGTTCGGTAACACC
TCCAACATGAGGTGTGATTAAAACATTCTTGAACTTTAGAATTGGGTCAT
TGGGATCAAACGGCTCTGTCCAAGCAACATCAATGCCCAAGCCTCCCAAG
TGGCCAGATTCGAGGTAATGAGCAATGGCCTCATAGTCTAAAAGACCTCC
TCGAGCAATATTCACCAGAAGAGAACCCTTTTTCATTGAAGATAGAAATG
ACTTGTTTACAATGCCAGCCGTCTGCTTATTTAAACTCAGGCAACAAACA
ACCACGTCGGCCATGCTAGCAAACTTAAAAATATCTTCATGACAACCCTT
CTCATCAACCAAATCATCAATGATCCCGTTTTTTACTGCAAGTGCACTAG
ATTGGCAAGAAACTTGAGAATGTGAAGCCCAACTCCTTTTTGTGGCAATA
ATTTTCACACCAAATGGTCGCAAGCGCTTTGCCAATTCAACCCCAATATT
TCCAAGCC
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