CX296628

Overview
NameCX296628
Unique NameCX296628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig668 contig Ccv1_Contig668:830..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: Y2355_CORGL (Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium glutamicum GN=Cgl2355 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 49/155 (31.61%), Postives = 69/155 (44.52%), Query Frame = -3
Query:  239 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE 703
            G IGV L + L+PF VK IA   S                  G   +  DE    +      + ADV V  L L   T  IVN   L  MK  +++VN+ RG L++ + +   L +G + G  +DV   EP   + P+ +  NV+ITPH     E
Sbjct:  135 GGIGVRLLEMLKPFNVKTIAVNNS------------------GRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVVVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEPLPDSHPLWEMDNVVITPHTANTNE 271          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 49/162 (30.25%), Postives = 81/162 (50.00%), Query Frame = -3
Query:  218 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 703
            G +G E+A+R +  G+ +I       SH   +    A A+  G+  DLV          +  S AD V   + L   T  + N    S MKKG  L+N+ARGG++D +A+   L++G +    +DV   EP   +  +++ +NV +TPH+G  T+ +   +A
Sbjct:  230 GKVGTEVARRAKGLGMTVI-------SHDPYAPADRARAL--GV--DLVS-------FDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVA 373          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 42/156 (26.92%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  173 SQVSCQSSALAVKNGIIDDLVDEKGCHE------DIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV-GDVALQLHAGTP 619
            SQV  ++ A  +   + D  + ++   E      D+      +D+V   + L  +T  ++++     MK  + +VN ARGG++D +A+   L+ G + G  +DV   EP     P+L+ +NV++TPH+G  T  + R  A +V  ++      G P
Sbjct:  154 SQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEP-PEGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVFQGGAP 308          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: Y1556_HAEIN (Putative 2-hydroxyacid dehydrogenase HI1556 OS=Haemophilus influenzae GN=HI1556 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  185 DEKGCHEDIFKFASM---ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPIL----KFKNVLITPHVGGVTEHSYRSM-AKVVGDV---ALQLH 556
            D   C E    F  +   AD+V     L + T  ++N   LS MKKG+ L+N  RG L+D  A+   L++GHLGG  +DV   EP + ++P++       N++ITPH+   ++ +  ++  KV+ ++     QLH
Sbjct:  179 DATVCREGYTPFDEVLKQADIVTLHCPLTETTKDLINAETLSKMKKGAFLINTGRGPLIDELALVDALKTGHLGGAALDVMVKEPPEKDNPLILAAKTMPNLIITPHIAWASDSAVTTLVGKVMQNIEEFVQQLH 313          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_HAEIN (D-3-phosphoglycerate dehydrogenase OS=Haemophilus influenzae GN=serA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = -3
Query:  155 SMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 517
            S  DVV   +     T  ++N + ++ +K+G++L+N ARG ++D +A+A  L+ G L G  IDV   EP   N+    P+ +F NV++TPH+GG T  +  ++  +V G        G+ L+ + F
Sbjct:  203 SSCDVVSLHVPELPSTKNLMNVARIAQLKQGAILINAARGTVVDIDALAQALKDGKLQGAAIDVFPVEPASINEEFISPLREFDNVILTPHIGGSTAEAQENIGFEVAGKFVKYSDNGSTLSSVNF 328          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: SERA_DICDI (D-3-phosphoglycerate dehydrogenase OS=Dictyostelium discoideum GN=serA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = -3
Query:  155 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPF----DPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQ-LHAGTPLTGLEF 478
            K+T G++ +  +++MKKGS L+N +RG ++    +A+ L SGHL G  +DV   EP     D    + K  N ++TPH+GG TE +  ++   V D+ +Q +++G     + F
Sbjct:  215 KETVGLIGEEEINTMKKGSYLLNASRGKVVQIPHLANALRSGHLAGAAVDVYPEEPSANCKDWECELQKCPNTILTPHIGGSTEEAQEAIGLEVSDLIVQFINSGASAGSVNF 327          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312          
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312          
The following BLAST results are available for this feature:
BLAST of CX296628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
Y2355_CORGL1.565e-1231.61Uncharacterized protein Cgl2355/cg2587 OS=Coryneba... [more]
SERA_ARATH1.565e-1230.25D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METTH2.669e-1226.92D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
Y1556_HAEIN4.553e-1232.59Putative 2-hydroxyacid dehydrogenase HI1556 OS=Hae... [more]
SERA_HAEIN5.947e-1232.54D-3-phosphoglycerate dehydrogenase OS=Haemophilus ... [more]
SERA_DICDI7.767e-1233.63D-3-phosphoglycerate dehydrogenase OS=Dictyosteliu... [more]
GHRB_YERPS7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

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Properties
Property NameValue
Genbank descriptionC05801A06SK FerrChloL1 Citrus clementina cDNA clone C05801A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296628 ID=CX296628; Name=CX296628; organism=Citrus clementina; type=EST; length=708bp
ACAACAATTGAGGTATAACGAATTTGCTTGTAATGGTCAACTGTCAAACA
GACAATGGTGGCTCTTTCAAAATGCCAGGAAAGATTAGTCAAAGGATAGC
ATGCCTATTAGTTTTGGCCGATGAAACAGATTCCTTAGAGTTGAATCAAT
TCACAAACTCTAGTCCTGTCAAAGGAGTCCCCGCATGAAGTTGAAGGGCA
ACGTCGCCAACAACCTTAGCCATTGATCTGTAAGAATGTTCGGTAACACC
TCCAACATGAGGTGTGATTAAAACATTCTTGAACTTTAGAATTGGGTCAT
TGGGATCAAACGGCTCTGTCCAAGCAACATCAATGCCCAAGCCTCCCAAG
TGGCCAGATTCGAGGTAATGAGCAATGGCCTCATAGTCTAAAAGACCTCC
TCGAGCAATATTCACCAGAAGAGAACCCTTTTTCATTGAAGATAGAAATG
ACTTGTTTACAATGCCAGCCGTCTGCTTATTTAAACTCAGGCAACAAACA
ACCACGTCGGCCATGCTAGCAAACTTAAAAATATCTTCATGACAACCCTT
CTCATCAACCAAATCATCAATGATCCCGTTTTTTACTGCAAGTGCACTAG
ATTGGCAAGAAACTTGAGAATGTGAAGCCCAACTCCTTTTTGTGGCAATA
ATTTTCACACCAAATGGTCGCAAGCGCTTTGCCAATTCAACCCCAATATT
TCCAAGCC
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