CX296628

Overview
NameCX296628
Unique NameCX296628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3 
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3 
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = -3 
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 47/178 (26.40%), Postives = 84/178 (47.19%), Query Frame = -3 
Query:  176 LGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R    FG+ ++   R   +H +   + +A              + C  D+    + +D +   L L  +T  ++++  L+ MKK  +L+N  RG ++D  A+   L++G +   G+DV   EP   + P+L   NV+  PH+G  T  +   MA+   D  +    GT
Sbjct:  153 MGRIGLALAQRAHFGFGMPVLYNARR--THEEAEQRFNA--------------RRC--DLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTLPNVVALPHIGSATHETRYGMAECAVDNLIAALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 44/168 (26.19%), Postives = 77/168 (45.83%), Query Frame = -3 
Query:  203 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 706
            +G IG+ +A+R   FG  +     +   H++   + +A                 H D+    + +D +   L L  +T  ++ +  L+ MK  ++L+NI RG ++D +A+   L  G + G G+DV   EP   + P+L   NV+  PH+G  T  +   MA    D
Sbjct:  149 MGRIGLAVAQRAH-FGFSMPVLYNARRHHAEAEQRFNAR----------------HCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVD 299
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 47/177 (26.55%), Postives = 82/177 (46.33%), Query Frame = -3 
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ +K  ++L+N  RG ++D +A+   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKIKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 47/177 (26.55%), Postives = 81/177 (45.76%), Query Frame = -3 
Query:  176 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 706
            +G IG+ LA+R   FG  +     S   H     +  A   ++  +D L+ E             AD +   L + +QT  ++ +  L+ MK  ++L+N  RG ++D + +   L+ G +   G+DV   EP   + P+L  +NV+  PH+G  T  +  +MA    D  +    GT
Sbjct:  153 MGRIGMALAQRAH-FGFSMPVLYTSRRPHEAAEQRFGA---RHCSLDTLLAE-------------ADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQTLIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTGT 312
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/165 (27.88%), Postives = 79/165 (47.88%), Query Frame = -3 
Query:  215 LGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 706
            +G IG+ LA+R    FG+ I+   R    H +               +   D + C  D+    + +D +   L L +QT  ++ +  L+ MK+ ++L+N  RG ++D +A+   L+ G L   G+DV   EP   +  +L  +NV+  PH+G  T  +   MAK
Sbjct:  153 MGRIGLALAQRAHLGFGMPILYNARK--HHDEA--------------EQRFDAEYC--DLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSSELLALRNVVALPHIGSATHETRYGMAK 299
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/168 (27.38%), Postives = 77/168 (45.83%), Query Frame = -3 
Query:  203 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 706
            +G IG+ LA+R   FG  +     +   HS+   +  A   +   ++ L+ E             AD V   L L  +T  ++ K+    MKK ++ +N  RG ++D +A+   L+ G +   G+DV   EP   + P+L   NV+  PH+G  T  +  +MA    D
Sbjct:  153 MGRIGLALAQRAH-FGFNMPILYNARRHHSEAEERFEARYCE---LETLLQE-------------ADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSNVVSLPHIGSATHETRYNMAATAVD 303
[Close]
BLAST of CX296628 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 45/168 (26.79%), Postives = 76/168 (45.24%), Query Frame = -3 
Query:  203 LGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 706
            +G IG+ LA+R   FG  +     +   HS+               ++  + + C  D+    + +D V   L L  +T  ++       MKK ++ +N  RG ++D  A+   L+SG +   G+DV   EP   + P+L  KNV+  PH+G  T  +  +MA    D
Sbjct:  153 MGRIGLALAQRAH-FGFNMPILYNARRHHSEA--------------EERFNARYC--DLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKNVVALPHIGSATHETRYNMAACAVD 303
The following BLAST results are available for this feature:
BLAST of CX296628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GHRB_YERPB7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA7.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP37.767e-1227.12Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_SERP51.014e-1126.40Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_PECCP1.325e-1126.19Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_YERPY2.260e-1126.55Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN2.260e-1126.55Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ERWT92.951e-1127.88Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_ENT382.951e-1127.38Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ENTS83.855e-1126.79Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionC05801A06SK FerrChloL1 Citrus clementina cDNA clone C05801A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296628 ID=CX296628; Name=CX296628; organism=Citrus clementina; type=EST; length=708bp
ACAACAATTGAGGTATAACGAATTTGCTTGTAATGGTCAACTGTCAAACA
GACAATGGTGGCTCTTTCAAAATGCCAGGAAAGATTAGTCAAAGGATAGC
ATGCCTATTAGTTTTGGCCGATGAAACAGATTCCTTAGAGTTGAATCAAT
TCACAAACTCTAGTCCTGTCAAAGGAGTCCCCGCATGAAGTTGAAGGGCA
ACGTCGCCAACAACCTTAGCCATTGATCTGTAAGAATGTTCGGTAACACC
TCCAACATGAGGTGTGATTAAAACATTCTTGAACTTTAGAATTGGGTCAT
TGGGATCAAACGGCTCTGTCCAAGCAACATCAATGCCCAAGCCTCCCAAG
TGGCCAGATTCGAGGTAATGAGCAATGGCCTCATAGTCTAAAAGACCTCC
TCGAGCAATATTCACCAGAAGAGAACCCTTTTTCATTGAAGATAGAAATG
ACTTGTTTACAATGCCAGCCGTCTGCTTATTTAAACTCAGGCAACAAACA
ACCACGTCGGCCATGCTAGCAAACTTAAAAATATCTTCATGACAACCCTT
CTCATCAACCAAATCATCAATGATCCCGTTTTTTACTGCAAGTGCACTAG
ATTGGCAAGAAACTTGAGAATGTGAAGCCCAACTCCTTTTTGTGGCAATA
ATTTTCACACCAAATGGTCGCAAGCGCTTTGCCAATTCAACCCCAATATT
TCCAAGCC
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