CX296636

Overview
NameCX296636
Unique NameCX296636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296636 vs. ExPASy Swiss-Prot
Match: Y2161_MYCVP (Uncharacterized oxidoreductase Mvan_2161 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_2161 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  146 LNNGAKMPPIGLGTWQAQHGVVXXXXXXXXXXGYRHIDCAYFYGNEKEIGTELKKLFEDGVIKREDLWITSKLWCCDHAPEDVPKAMDRTLQDLQIDYVDLYLVHWPVRTKKGFI 490
            LN+   MP IGLG  +                GYR ID A  YGNE  +G  + K      + R +L++T+KL   D   +    A+  +L+ L +DYVDLYL+HWP  ++  ++
Sbjct:   12 LNDDNTMPVIGLGVGELSDAEAEQSVLAALEAGYRLIDTAAAYGNEAAVGRAIAK----SGVPRGELFVTTKLATDDLGFQSSQDALRASLERLGLDYVDLYLIHWPAGSQGTYV 122          
BLAST of CX296636 vs. ExPASy Swiss-Prot
Match: YOF5_CAEEL (Uncharacterized oxidoreductase ZK1290.5 OS=Caenorhabditis elegans GN=ZK1290.5 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  146 LNNGAKMPPIGLGTWQAQHGVVXXXXXXXXXXGYRHIDCAYFYGNEKEIGTELKKLFEDGVIKREDLWITSKLWCCDHAPEDVPKAMDRTLQDLQIDYVDLYLVHWPVRTKKGFISLNPEDLLQPDIPSTWKAMEALYD 562
            L+N  +MP IGLGT  +               GYR ID A  YG EK++G  +K       + RE++++++KLW  D   ++V  A   + + LQ DY+D+Y++H P   +     +N ++  +     TW+ ME LY+
Sbjct:    7 LSNNVEMPLIGLGTTHSGGYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVKNCS----VPREEMFLSTKLWPVD-CGDEVYNAFQTSCEKLQTDYLDMYMIHMP---QLPDWIVNQKETKE----KTWRQMELLYE 133          
BLAST of CX296636 vs. ExPASy Swiss-Prot
Match: YER5_SCHPO (Uncharacterized oxidoreductase C2F3.05c OS=Schizosaccharomyces pombe GN=SPAC2F3.05c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 2
Query:  137 YFELNNGAKMPPIGLGTWQAQHGVVXXXXXXXXXXGYRHIDCAYFYGNEKEIGTELKKLFEDGVIKREDLWITSKLWCCDHAPEDVPKAMDRTLQDLQIDYVDLYLVHWP 466
            + +LNNG K P    G++                 GYRHID A  Y NE + G  + K  E+   KRED+W TSKL       +    ++D +++   + Y+DL+L+H P
Sbjct:    5 FVKLNNGLKCPQFAYGSYMVNRTKCFDSVYAALQCGYRHIDSAQMYHNEADCGRAILKFMEETGTKREDIWFTSKLNDLS-GYKSTLSSIDASVKACGLGYIDLFLLHSP 113          
BLAST of CX296636 vs. ExPASy Swiss-Prot
Match: YKW2_SCHPO (Uncharacterized oxidoreductase P32A8.02 OS=Schizosaccharomyces pombe GN=SPAP32A8.02 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 48/142 (33.80%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  146 LNNGAKMPPIGLGTWQAQHGVVXXXXXXXXXXGYRHIDCAYFYGNEKEIGTELKKLFEDGVIKREDLWITSKLW-CCDHAPEDVPKAMDRTLQDLQIDYVDLYLVHWPVRTKKGFISLNPEDLLQPDIPSTWKAMEALYDSG 568
            L NG  +P IG G +  ++             GYRHID A  YGNE   G  +    E   +KR D+++TSKL  C D+       A+  +L  L   Y+DL+L+  P   KK  I             ++WKAME   DSG
Sbjct:   13 LTNGMVIPRIGFGAFMLKYNECYGLVTQALDSGYRHIDTAAVYGNEDICGKAIVDWCEKNNVKRTDIFLTSKLANCSDY--YSTRAAIRSSLHHLG-TYIDLFLIQSPAGGKKSRI-------------ASWKAMEEFVDSG 138          
The following BLAST results are available for this feature:
BLAST of CX296636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
Y2161_MYCVP3.301e-1133.91Uncharacterized oxidoreductase Mvan_2161 OS=Mycoba... [more]
YOF5_CAEEL4.311e-1131.65Uncharacterized oxidoreductase ZK1290.5 OS=Caenorh... [more]
YER5_SCHPO4.311e-1132.73Uncharacterized oxidoreductase C2F3.05c OS=Schizos... [more]
YKW2_SCHPO7.353e-1133.80Uncharacterized oxidoreductase P32A8.02 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionC05801B03SK FerrChloL1 Citrus clementina cDNA clone C05801B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296636 ID=CX296636; Name=CX296636; organism=Citrus clementina; type=EST; length=568bp
GAGGAATTTCTGCCATCTCCCCGCAAATTCAATCTCATCTCTCCACAAAT
TAAAAGGCCAGTGATCACTCACTGCCCCTGGTCATTTCACACACATAACT
CGGGAAATGGACCAAATAGCAAACGATAACGTTCAATACTTCGAGTTGAA
CAATGGAGCCAAAATGCCGCCTATCGGATTAGGCACATGGCAGGCTCAAC
ATGGTGTTGTTGCCGAAGCCATTGCTATTGCCATCAAGGCTGGATACCGT
CATATCGATTGTGCTTATTTCTATGGCAATGAAAAGGAGATTGGTACCGA
GCTGAAGAAACTGTTTGAAGATGGAGTGATCAAGCGTGAGGATCTATGGA
TCACCTCCAAGCTCTGGTGTTGTGATCATGCACCAGAAGATGTACCAAAG
GCAATGGACAGAACTTTGCAGGACTTGCAGATTGATTACGTGGATTTGTA
CCTCGTGCACTGGCCAGTGCGAACGAAGAAGGGATTTATAAGCCTCAATC
CCGAAGACCTTCTTCAACCAGATATACCAAGCACATGGAAAGCAATGGAG
GCACTTTATGATTCTGGC
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