CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:226..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41
Identity = 81/178 (45.51%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N AA L G N ++I+   +P +   +VL+++  VGICGSDV    T  C   V+ +P+VIGHE AG + KVG +V +L  GDRVA+EP   C  C+ CK G+YNLC E ++ ++    G+L     H AD C KLPDN+++EEGA  +PL++ +HAC RA I   + ++I+GAGPIG+
Sbjct:    4 NYAAVLHGANDVRIEKIPVPEINDDEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGDKVSSLRVGDRVAIEPTQPCRSCELCKRGKYNLCVEPRYCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIHACNRAKITLGSKIVILGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYLD_RHIME (Putative D-xylulose reductase OS=Rhizobium meliloti GN=R02526 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.589e-41
Identity = 82/157 (52.23%), Postives = 107/157 (68.15%), Query Frame = 1
Query:  241 LGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            L P DVL+ ++ VG+CGSDVHY    +   FVV EPM++GHE AGV+ +VGS+V+ L  GDRV +EPGI        K G YN+ P ++F+ATPPVHG L  +VVHPA   ++LPD+VS  EGAM EP ++G+ A  RA I P     +MGAGPIG+
Sbjct:   24 LSPTDVLIGIRTVGVCGSDVHYYTHGKIGPFVVNEPMILGHEAAGVVLEVGSQVRHLKKGDRVCMEPGIPDLSSRSSKLGIYNVDPSVRFWATPPVHGCLTPEVVHPAAFTYRLPDHVSFAEGAMVEPFAIGVQAALRAGIRPGDVGAVMGAGPIGM 180          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYLD_AGRT5 (Putative D-xylulose reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu4318 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 83/173 (47.98%), Postives = 109/173 (63.01%), Query Frame = 1
Query:  211 LKIQPFELPS------LGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            L ++ F++P       LGP DV +R   VGICGSDVHY    +   FVV  PMV+GHE +G + + GS+V  L  GDRV +EPGI        K G YN+ P ++F+ATPP+HG L  +V+HPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    ++ GAGPIG+
Sbjct:   12 LSLRDFDIPGGAGSGELGPKDVRIRTHTVGICGSDVHYYTHGKIGHFVVNAPMVLGHEASGTVIETGSDVTHLKIGDRVCMEPGIPDPTSRASKLGIYNVDPAVRFWATPPIHGCLTPEVIHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAALRARIQPGDIAVVTGAGPIGM 184          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYLD_MORMO (D-xylulose reductase OS=Morganella morganii PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 80/157 (50.96%), Postives = 103/157 (65.61%), Query Frame = 1
Query:  241 LGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            LG  DV +++  VGICGSDVHY +  R   FVV EPMV+GHE +GVI   G  VK L  GDRV +EPGI   +    + G YNL P ++F+ATPP+ G L   V+HPA   FKLPDNVS  +GAM EPL++G+ +  +A I P    L++GAG IG+
Sbjct:   25 LGDDDVEIKIHTVGICGSDVHYYQHGRIGPFVVDEPMVLGHEASGVITAAGKNVKHLKVGDRVCMEPGIPDLQSPQSRAGIYNLDPAVRFWATPPIDGCLRESVIHPAAFTFKLPDNVSFAQGAMVEPLAIGMQSATKAGIKPGDIGLVIGAGTIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 81/179 (45.25%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSL-GPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N A  L  V  + I+   +P++  P+ V + +KA GICGSD+HY ++     +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K GRYNLCP M F ATPP+ G+L    + P D   KLP+ VS EEGA  EPLSVG+H+ + A +   T V++ GAGP+GL
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGRYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGL 184          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 79/168 (47.02%), Postives = 106/168 (63.10%), Query Frame = 1
Query:  211 LKIQPFELP-SLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            L ++   LP  +GP DV + +  VG+CGSDVHY        +VV+ PMV+GHE AG + + G+ V+T   GDRV +EPG+        K G YN+ P++ F+ATPPVHG LA   VHPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    +++G GPIG+
Sbjct:   12 LSLREIALPLDVGPDDVKIAIHTVGVCGSDVHYYTHGAIGSYVVRAPMVLGHEAAGTVVETGANVETFKAGDRVCMEPGVPNLSSRATKLGIYNVDPDVSFWATPPVHGVLAPYAVHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAASRARIVPGDVAVVVGCGPIGI 179          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  247 PYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +V++++KA GICGSD+HY    R A++VV+ PMV+GHE +G++  +G  VKTL  GDRVALEPGI        K GRYNL P +KF ATPP  G+L        D  +KLPD+VS EEGA+ EPLSV +HA + A I      ++ GAGPIGL
Sbjct:   31 PNEVIIQIKATGICGSDIHYYTHGRIANYVVESPMVLGHESSGIVALIGENVKTLKVGDRVALEPGIPDRFSPEMKEGRYNLDPNLKFAATPPFDGTLTKYYKTMKDFVYKLPDDVSFEEGALIEPLSVAIHANKLAKIKFGARCVVFGAGPIGL 185          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 80/179 (44.69%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSL-GPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N A  L  V  + I+   +P++  P+ V + +KA GICGSD+HY ++     +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K G YNLCP M F ATPP+ G+L    + P D   KLP+ VS EEGA  EPLSVG+H+ + A +   T V++ GAGP+GL
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGSYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGL 184          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 79/183 (43.17%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVV-KEP---MVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPP-VHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N  A L    T+KI   E+P     +VL++++ VGICGSDVH  ++     F+  K+P   + +GHECAG +  VGS V+   PGDRV +EPG+ C  C +C  G+YN+CP++ F AT P   G+L + + HP    +KLPDN+   EGA+ EP +VG+HA   A++ P   ++I+GAG IGL
Sbjct:    3 NSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFES---GPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPNYRGALTHYLCHPESFTYKLPDNMDTMEGALVEPAAVGMHAAMLADVKPGKKIIILGAGCIGL 182          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: XYL2_PICST (D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 81/186 (43.55%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSLG-PYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH-------GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N +  L  ++ +  + ++ P +  P DVLV++K  GICGSD+H+    R  +FV+ +PMV+GHE AG + +VG  V +L  GD VA+EPGI     D  K G YNLCP M F ATP          G+L      P D   KLPD+VSLE GA+ EPLSVG+HA +  ++     V + GAGP+GL
Sbjct:    4 NPSLVLNKIDDISFETYDAPEISEPTDVLVQVKKTGICGSDIHFYAHGRIGNFVLTKPMVLGHESAGTVVQVGKGVTSLKVGDNVAIEPGIPSRFSDEYKSGHYNLCPHMAFAATPNSKEGEPNPPGTLCKYFKSPEDFLVKLPDHVSLELGALVEPLSVGVHASKLGSVAFGDYVAVFGAGPVGL 189          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
DHSO_BOMMO2.104e-4145.51Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
XYLD_RHIME3.589e-4152.23Putative D-xylulose reductase OS=Rhizobium melilot... [more]
XYLD_AGRT55.182e-4047.98Putative D-xylulose reductase OS=Agrobacterium tum... [more]
XYLD_MORMO3.359e-3950.96D-xylulose reductase OS=Morganella morganii PE=1 S... [more]
DHSO1_YEAST3.359e-3945.25Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
XYLD_RHILO7.483e-3947.02Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
XYL2_YEAST9.773e-3951.61D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
DHSO2_YEAST1.667e-3844.69Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
YDJJ_ECOLI1.560e-3643.17Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
XYL2_PICST4.540e-3643.55D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
back to top