CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGL 178          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGL 178          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGL 178          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_LEGPC (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Corby) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 59/166 (35.54%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  217 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI GAGPIG+
Sbjct:   15 MQDVPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: RSPB_ECOLI (Starvation-sensing protein rspB OS=Escherichia coli (strain K12) GN=rspB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  205 NTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N L I   E+P+    +V V++K  GICGSD H     R  +   K P VIGHE  GVI+ VG  V++   G+RVA++P +SC  C  C  G+ N+C  +   A   VH  G  +   V PA   +K+P+ V+ +   M EP ++  +            VL+ GAGPIGL
Sbjct:   10 NQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIY---RGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTL---AVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGL 174          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_STRMK (L-threonine 3-dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  217 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++   +P+ GP +VL++++   ICG+D+H       +   +K  + IGHE  G +  +GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     N+  E +VLI GAGPIG+
Sbjct:   15 LEEVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAALGSAVTGYEIGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFNVIGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            L ++   +P +GP DVL+R+K   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS    V  P      +PD++S E  A+ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   17 LWMEDVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  229 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++P  GP +VL+++ A  ICG+D+H  +    A   +K P ++GHE AG + ++G  V+ +  GD V++E  I C +C  C+ G+Y++C   K F      G  A   V PA   +K P ++  E   + EPL   +       I  + +VLI GAGP+GL
Sbjct:   23 DVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGL 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_PYRAB (Probable L-threonine 3-dehydrogenase OS=Pyrococcus abyssi GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  229 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++P  GP +VL+++ A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V+ +  GD V++E  I C +C  C+ G+Y++C   K F      G  A   V PA   +K P ++  E   + EPL   +       I  + +VLI GAGP+GL
Sbjct:   23 DVPKPGPGEVLIKVIATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNVWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGL 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_KLEP7 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGV 177          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
TDH_FRATH9.190e-2135.00L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF9.190e-2135.00L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT19.190e-2135.00L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_LEGPC1.200e-2035.54L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
RSPB_ECOLI1.200e-2036.84Starvation-sensing protein rspB OS=Escherichia col... [more]
TDH_STRMK1.568e-2033.94L-threonine 3-dehydrogenase OS=Stenotrophomonas ma... [more]
TDH_RHIE61.568e-2035.71L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_PYRHO1.568e-2034.16Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRAB1.568e-2034.78Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_KLEP71.568e-2035.00L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
back to top