CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURP8 (L-threonine 3-dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DV++R+    ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SOLUE (L-threonine 3-dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P++G  DVL+R+   GICG+DVH  K    A   +  PM IGHE  G IE VGS V    PGD V+ E  + C RC +C  GR +LC + M      P  G+ A  +  P    ++  + + L+  A+ +P    +H      +  E +VLI GAGPIG+
Sbjct:   21 PAIGINDVLIRVLRTGICGTDVHIYKWDEWARETIHVPMAIGHEFVGRIEAVGSNVADFFPGDIVSGEGHVVCGRCRNCFAGRRHLCAKTMGVGVNRP--GAFAEYIALPMTNIWRHHEGIDLDVAAIFDPFGNAVHTALSFPVLGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_CHRVO (L-threonine 3-dehydrogenase OS=Chromobacterium violaceum GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            L++    LP +G  D+L+++    ICG+D+H       +   +  PM +GHE  GV+  +GSEV+    G RV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   F +PD++S +  ++ +P    +H     N+  E +VLI GAGPIG+
Sbjct:   13 LEMTDVPLPEVGHNDLLIKIVKTAICGTDIHIWNWDEWSQKTIPVPMHVGHEYVGVVAGMGSEVQGFKIGQRVSGEGHITCGYCRNCRAGRRHLCRNTTGVGVNR-EGAFAEYLVIPAFNAFPIPDDISDDLASIFDPFGNAVHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: GATD_ECOLI (Galactitol-1-phosphate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=gatD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +V V++ + G+CGSD+  +       +    P+ +GHE +G I+ VGS V  L PGD VA  P + C+ C  C  G Y+ C +  F  +    G  A  +V      F LP ++ +E+GA  EP++VGLHA   A      NV+I+GAG IGL
Sbjct:   27 EVRVKIASSGLCGSDLPRIFKNGAHYY----PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGL 174          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: GATD_ECO57 (Galactitol-1-phosphate 5-dehydrogenase OS=Escherichia coli O157:H7 GN=gatD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +V V++ + G+CGSD+  +       +    P+ +GHE +G I+ VGS V  L PGD VA  P + C+ C  C  G Y+ C +  F  +    G  A  +V      F LP ++ +E+GA  EP++VGLHA   A      NV+I+GAG IGL
Sbjct:   27 EVRVKIASSGLCGSDLPRIFKNGAHYY----PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGL 174          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P +GP DVL+R+K   ICG+DVH     + A   +  PMV+GHE  G I +VGS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS A  V  P      +PD+V  E  A+ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   24 VPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIAEVGSAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVTIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURVG (L-threonine 3-dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURTA (L-threonine 3-dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  A+ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGV 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURS3 (L-threonine 3-dehydrogenase OS=Burkholderia sp. (strain 383) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURPS (L-threonine 3-dehydrogenase OS=Burkholderia pseudomallei GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  A+ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFSIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGV 177          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
TDH_BURP84.561e-2036.48L-threonine 3-dehydrogenase OS=Burkholderia phymat... [more]
TDH_SOLUE7.780e-2037.50L-threonine 3-dehydrogenase OS=Solibacter usitatus... [more]
TDH_CHRVO7.780e-2033.53L-threonine 3-dehydrogenase OS=Chromobacterium vio... [more]
GATD_ECOLI7.780e-2037.25Galactitol-1-phosphate 5-dehydrogenase OS=Escheric... [more]
GATD_ECO577.780e-2037.25Galactitol-1-phosphate 5-dehydrogenase OS=Escheric... [more]
TDH_RHISN1.016e-1937.89L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]
TDH_BURVG1.016e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia vietna... [more]
TDH_BURTA1.016e-1935.85L-threonine 3-dehydrogenase OS=Burkholderia thaila... [more]
TDH_BURS31.016e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia sp. (s... [more]
TDH_BURPS1.016e-1935.85L-threonine 3-dehydrogenase OS=Burkholderia pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
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