CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURCC (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURCA (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL++++   ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_XANCP (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  217 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++   +P+ GP +VL++++   ICG+D+H       +   +   + IGHE  G + ++GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI GAGPIG+
Sbjct:   15 LEQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_XANCB (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  217 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++   +P+ GP +VL++++   ICG+D+H       +   +   + IGHE  G + ++GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI GAGPIG+
Sbjct:   15 LEQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_XANC8 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  217 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++   +P+ GP +VL++++   ICG+D+H       +   +   + IGHE  G + ++GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI GAGPIG+
Sbjct:   15 LEQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTITPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_RHILW (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P +GP DVL+R++   ICG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS    V  P      +P+++S E  A+ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVAIPEDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 57/161 (35.40%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P +GP DVL+R++   ICG+DVH     + A   +  PMV+GHE  G I ++GS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS    V  P      +PD++  E  A+ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 54/159 (33.96%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PM+ GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P ++  +  A+ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMIAGHEYVGEVVDVGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVLPAFNAFKIPADIPDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURCM (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL+++    ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIHRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGV 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BURA4 (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  DVL+++    ICG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDVLIKIHRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGV 177          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
TDH_BURCC1.016e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCA1.016e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_XANCP1.327e-1932.73L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANCB1.327e-1932.73L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_XANC81.327e-1932.73L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_RHILW1.327e-1935.40L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_AGRRK1.733e-1935.40L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
TDH_SHEFN2.264e-1933.96L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]
TDH_BURCM2.956e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
TDH_BURA42.956e-1935.22L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]

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Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
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