CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 59/162 (36.42%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            LP +GP DVL++++   ICG+DVH       A   V  P+V GHE  G +  VGS V     G RV+ E  I C  C +C+ GR +LC          VH  G+ A  +  P      +PD+V  E  A+ +PL   +H     ++  E +VL+ GAGPIG+
Sbjct:   24 LPEIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVG---VHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: DHSO_PIG (Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN=SORD PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 444
            N++  + G   L+++ + +P  GP  VL++M +VGICGSDVHY +  R  +FVVK+PMV+GHE +G   KVGS V  L PGDR A EPG
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNXVLLKMHSVGICGSDVHYWQHGRIGNFVVKKPMVLGHEASGTXVKVGSLVTHLKPGDRXAXEPG 96          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +VL++     ICG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C +C +C+ GR ++C   K      + G  A   V PA+  F LP ++S + GA+ +P    +H     N+  E +VLI GAGPIG+
Sbjct:   28 EVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGE-DVLITGAGPIGI 178          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_STRAW (L-threonine 3-dehydrogenase OS=Streptomyces avermitilis GN=tdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 60/181 (33.15%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  169 EEVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            E+     WLM V          P +GP DVL+++   GICG+D+H       A   V+ P+V+GHE  G + + G +V  +  GDRV+ E  + C +C +C+ GR +LC            G+ A  V  PA   +     V L+  A+ +P    +H      +  E +VLI GAGPIGL
Sbjct:    7 EKAEPGLWLMDVPE--------PEIGPGDVLIKVLRTGICGTDLHIRSWDGWAQQAVRTPLVLGHEFVGEVVETGRDVVDIKAGDRVSGEGHLVCGKCRNCQAGRRHLCRATVGLGVGR-DGAFAEYVALPAANVWVHRVPVDLDVAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGL 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P +GP DVL++++   ICG+DVH     + A   V  PMV GHE  G +   G+ V     G RV+ E  I C  C +C+ GR +LC   +      P  G+    +  P      +PD+V  E  A+ +PL   +H     ++  E +VL+ GAGPIG+
Sbjct:   24 VPEIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVGVNRP--GAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGI 181          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_BACA2 (L-threonine 3-dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 1
Query:  208 TLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            TLK  P  +PS+   +VL++++A  ICG+DVH     + A   +K P V GHE +G++ + G  V  +  GD V+ E    C  C  C  G++++C   K        GS A  V  PA   +K P ++     ++ EPL   +H    ++     +  I+G GPIGL
Sbjct:   18 TLKEIP--IPSINENEVLIKVQAASICGTDVHIYNWDQWAQKRIKTPQVFGHEFSGIVAETGKHVTNVKTGDYVSAETHFVCGTCVPCLTGKHHVCTHTKILGVDTA-GSFAEYVKVPARNVWKNPADMDPAVASVQEPLGNAVHTVLESSQLAGGSAAIIGCGPIGL 182          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: BDH2_YEAST (Probable (R,R)-butanediol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=BDH2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 60/181 (33.15%), Postives = 86/181 (47.51%), Query Frame = 1
Query:  241 LGPYDVLVRMKAVGICGSDVHYL---KTLRCADFVVKE------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISC---------------WRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            + P ++++ ++  GICG+D+H           D    E      P  +GHE AG + +VG  VK L  GD+V +EP  +C               W C  CK G YN+C  +         G  A +VV     C+K+PD V L+  A+ +PL+V  HA R       +  LI+GAGPIGL
Sbjct:   24 VAPDELVIDIEWCGICGTDLHEYTDGPIFFPEDGHTHEISHNPLPQAMGHEMAGTVLEVGPGVKNLKVGDKVVVEPTGTCRDRYRWPLSPNVDKEW-CAACKKGYYNICSYLGLCGAGVQSGGFAERVVMNESHCYKVPDFVPLDVAALIQPLAVCWHAIRVCEFKAGSTALIIGAGPIGL 203          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: BDH1_YEAST ((R,R)-butanediol dehydrogenase OS=Saccharomyces cerevisiae GN=BDH1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.510e-18
Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFVVKE-----------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISC-----WR---------CDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +V++ +   GICGSD+H  + L    F+ K+           P+ +GHE +G++ KVG +V  +  GD V ++   SC     W          CD C+ G  NLC    F     + G  A QVV        +P  + L+  A+ EPLSV  HA + +     ++ L++GAGPIGL
Sbjct:   28 EVIIDVSWCGICGSDLH--EYLDGPIFMPKDGECHKLSNAALPLAMGHEMSGIVSKVGPKVTKVKVGDHVVVDAASSCADLHCWPHSKFYNSKPCDACQRGSENLCTHAGFVGLGVISGGFAEQVVVSQHHIIPVPKEIPLDVAALVEPLSVTWHAVKISGFKKGSSALVLGAGPIGL 203          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SILPO (L-threonine 3-dehydrogenase OS=Silicibacter pomeroyi GN=tdh PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P +GP DVL+++K  GICG+D+H       A   V  PM+ GHE AG I ++G +V  L  G RV+ E  +        + G+++L P  +      V G+ A  +  PA     LP+++  E GA+ +PL   +H     ++  E +VLI GAGPIG+
Sbjct:   20 VPEIGPDDVLIKIKKTGICGTDIHIWNWDEWAAHTVPVPMITGHEFAGEIVELGRDVTGLSIGQRVSGEGHLIGTESRQSRAGKFHLDPGTRGIGV-NVQGAFAQYLRLPAFNVVPLPEDIPDEIGAILDPLGNAVHTALSFDLLGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 50/161 (31.06%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  229 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            E+P +GP +VL+++KA  ICG+DVH       A   +K P  +GHE  G + ++G  V ++  GD V+ E  I C +C  C+ G  ++C E          G+ A  +  P    +    N+ LE  ++ EPL   +H     ++  + +V ++G GPIG+
Sbjct:   23 EIPKIGPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIVCGKCRACRTGNAHIC-ENTLILGVDTDGAFAEYIKVPESNVWINDKNIPLEILSIQEPLGNAVHTVFSGDVVGK-SVAVIGCGPIGM 181          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
TDH_MESSB1.467e-1836.42L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
DHSO_PIG1.916e-1850.56Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN... [more]
TDH_PARUW2.503e-1837.91L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
TDH_STRAW5.575e-1833.15L-threonine 3-dehydrogenase OS=Streptomyces avermi... [more]
TDH_RHILO5.575e-1834.16L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_BACA29.510e-1832.14L-threonine 3-dehydrogenase OS=Bacillus amylolique... [more]
BDH2_YEAST9.510e-1833.15Probable (R,R)-butanediol dehydrogenase 2 OS=Sacch... [more]
BDH1_YEAST9.510e-1832.02(R,R)-butanediol dehydrogenase OS=Saccharomyces ce... [more]
TDH_SILPO1.242e-1735.00L-threonine 3-dehydrogenase OS=Silicibacter pomero... [more]
TDH_THETN2.767e-1731.06L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]

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Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
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