CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:226..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: ADH_MYCTU (Probable alcohol dehydrogenase adh OS=Mycobacterium tuberculosis GN=adh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 56/184 (30.43%), Postives = 83/184 (45.11%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKT---LVPGDRVALEPGISCWRCDHCKGGRYNLC-----PEMKFF----ATPPVHGSLAN-QVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETN----VLIMGAGPIGL 711
            L ++ + LP +G  D LVR++A G+CG+D           F      V GHE  G I  +G   +    +  GDRVA+E   SC +C +C+GG Y  C      +M  F      P + G  A  Q + P  +  ++  ++S E   +  PL  G+   R     PET     V ++G G  GL
Sbjct:   18 LVVRQYRLPRIGDDDALVRVEACGLCGTDHEQYTGELAGGFA----FVPGHETVGTIAAIGPRAEQRWGVSAGDRVAVEVFQSCRQCANCRGGEYRRCVRHGLADMYGFIPVDREPGLWGGYAEYQYLAPDSMVLRVAGDLSPEVATLFNPLGAGI---RWGVTIPETKPGDVVAVLGPGIRGL 194          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: ADH5_YEAST (Alcohol dehydrogenase 5 OS=Saccharomyces cerevisiae GN=ADH5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWRCDHCKGGRYNLCPEMKFFATPPVH-GSLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGLHACRRANIGPETNVLIMGA 696
            L+ +   +P   P ++LV +K  G+C SD+H         F +K P++ GHE AGV+ K+GS VK    GD   ++    +C  C++C+ G  + CP +    T   H G+        A     +P NV+L E A  +C  ++V   A +RAN+ P   V I GA
Sbjct:   22 LEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWHG--DWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCPYLD--GTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITV-YKALKRANVIPGQWVTISGA 182          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: ADH5_SACPS (Alcohol dehydrogenase 5 OS=Saccharomyces pastorianus GN=ADH5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWRCDHCKGGRYNLCPEMKFFATPPVH-GSLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGLHACRRANIGPETNVLIMGA 696
            L+ +   +P   P ++LV +K  G+C SD+H         F +K P++ GHE AGV+ K+GS VK    GD   ++    +C  C++C+ G  + CP +    T   H G+        A     +P NV+L E A  +C  ++V   A +RAN+ P   V I GA
Sbjct:   22 LEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWHG--DWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCPYLD--GTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITV-YKALKRANVIPGQWVTISGA 182          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 50/188 (26.60%), Postives = 81/188 (43.09%), Query Frame = 1
Query:  211 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATP---------PVHGSLANQVVHPADL----CFKLPDNVSLEEGAMCEPLSV---GL-----HACRRANIGPETNVLIMGAGPIGL 711
            L I+  E+      +V ++M A G+CG+D+ +L T   + F    PM++GHE  G++E VG  V ++  GD+V L     C  C  C   + N+C E++   T             G L +Q +           K      ++EGA  E + +   G       A   A + P +   + G G +GL
Sbjct:   22 LAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFC---PMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGAAINSAKVTPGSTCAVFGLGGVGL 206          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: YDJL_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjL OS=Escherichia coli (strain K12) GN=ydjL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 47/170 (27.65%), Postives = 81/170 (47.65%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWRCDHCKGGRYNLCPEMKFFA--TPPVHGSLANQVVHPADL-------CFKLPDNVSLEEGAMCEPLSVGLHA-CRRANIGPETNVLIMGAGPIGL 711
            P  GP DV++ +KA  ICG+D+ +      +D   +   + GHE AG I +VG +VK    G RV  +  G  C  C  C+ G +  C E            G  +   + P ++        +++PD V  E+ A+ +P+     +  +++   P  +V+++G GP+GL
Sbjct:   22 PMCGPEDVVIEIKAAAICGADMKHYNVDSGSD---EFNSIRGHEFAGCIAQVGEKVKDWKVGQRVVSDNSGHVCGVCPACEQGDFLCCTEKVNLGLDNNTWGGGFSKYCLVPGEILKIHRHALWEIPDGVDYEDAAVLDPICNAYKSIAQQSKFLPGQDVVVIGTGPLGL 188          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 46/161 (28.57%), Postives = 76/161 (47.20%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFAT------PPVHGSLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGLHACRRANIGPETNVLIMGAGPIG 708
            DV +R+   G+C +DV + + +         P+V GHE AGV+ +VG++VK+   GD V +   + SC  C++C     N C +  F             G  +  +V     CFK+PD   LE+ A  +C  ++V     R     P  ++ ++G G +G
Sbjct:   36 DVSLRITHCGVCYADVAWTRNILNNSMY---PLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLG 193          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: FADH_PSEPU (Glutathione-independent formaldehyde dehydrogenase OS=Pseudomonas putida GN=fdhA PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 52/201 (25.87%), Postives = 88/201 (43.78%), Query Frame = 1
Query:  178 NMAAWLMGVNTLKIQPFELPSLGP-------YDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSL---------ANQVVHP-ADL-CFKLPDNVSLEE-----GAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            N     +G   +++Q  + P +         + V++++ +  ICGSD H ++    A       +V+GHE  G + + G +V+ L  GD V++   ++C RC  CK     +C  +        +G +         A  ++ P AD    KLPD     E       + + L  G H    A +GP + V + GAGP+GL
Sbjct:    4 NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV----GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYLLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGL 200          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: DOIAD_STRKN (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces kanamyceticus GN=kanE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 1
Query:  229 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGS---EVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            ++P+  P + LV +    ICGSD   L   R        P+V GHE +G + ++       ++LV G  V  +   +C  C  C  G   LC  ++        G+ A  +  P D    LPD +SL      EPL+V L+A   A + P   V +MGAG IGL
Sbjct:   18 DVPTPRPGEALVHIAYNSICGSD---LSLYRGVWHGFGYPVVPGHEWSGTVVEINGANGHDQSLV-GKNVVGDLTCACGNCAACGRGTPVLCENLQELGFTK-DGACAEYMTIPVDNLRPLPDALSLRSACQVEPLAVALNAVSIAGVAPGDRVAVMGAGGIGL 176          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: ADHB_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein adhB OS=Bacillus subtilis GN=adhB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  253 DVLVRMKAVGICGSDVHYLKTLRCADFV--VKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMK-------FFA----TPPVHGSLANQVVHP-ADLC-FKLPDNVSLEE-----GAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            D+++++ +  ICGSD+H +       F+  ++E  VIGHE  G++E+VGS V  L  GDRV +   I+C  C  CK    + C +         +F     T    G  A  +  P A+   FK+P+  S EE       + + ++ G  +   A +     V+++G GP+GL
Sbjct:   27 DMIIKVTSTAICGSDLHLIH-----GFIPNMQEDYVIGHEPMGIVEEVGSGVTKLKKGDRVIIPFNIACGECFFCKNQLESQCDQSNDNGEMGAYFGYSGQTGGYPGGQAEYLRVPFANFTHFKIPE--SCEEPDEKLSVIADAMTTGFWSVDNAGVKKGDTVIVLGCGPVGL 192          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
ADH_MYCTU3.870e-1130.43Probable alcohol dehydrogenase adh OS=Mycobacteriu... [more]
ADH5_YEAST3.870e-1132.53Alcohol dehydrogenase 5 OS=Saccharomyces cerevisia... [more]
ADH5_SACPS3.870e-1132.53Alcohol dehydrogenase 5 OS=Saccharomyces pastorian... [more]
ADH6_RAT5.054e-1126.60Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
YDJL_ECOLI6.601e-1127.65Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH1_ORYSJ6.601e-1128.57Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
FADH_PSEPU8.621e-1125.87Glutathione-independent formaldehyde dehydrogenase... [more]
DOIAD_STRKN8.621e-1131.712-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADHB_BACSU8.621e-1129.48Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
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