CX296641

Overview
NameCX296641
Unique NameCX296641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:226..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_ERWCT (L-threonine 3-dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=tdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  232 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            +P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G I  +G EV     GDRV+ E  I+C  C +C+ GR +LC   +      P  GS A  +V PA   F++PDN+S E  A+ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   20 MPELGHNDIMIKIRKSAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEIVAIGQEVNGFHIGDRVSGEGHITCGYCRNCRAGRRHLCRNAIGVGVNRP--GSFAEYLVIPAYNAFRIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGM 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHEAM (L-threonine 3-dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  A+ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTTGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SALAR (L-threonine 3-dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG+
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGV 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHESM (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
BLAST of CX296641 vs. ExPASy Swiss-Prot
Match: TDH_SHESA (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  235 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 711
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG+
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGI 177          
The following BLAST results are available for this feature:
BLAST of CX296641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
TDH_ERWCT1.086e-2137.27L-threonine 3-dehydrogenase OS=Erwinia carotovora ... [more]
TDH_ENTS81.086e-2135.85L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ENT381.086e-2135.85L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]
TDH_SHEPA1.418e-2135.22L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_SHEHH1.418e-2135.22L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]
TDH_SHEAM1.418e-2135.85L-threonine 3-dehydrogenase OS=Shewanella amazonen... [more]
TDH_SALAR1.418e-2135.85L-threonine 3-dehydrogenase OS=Salmonella arizonae... [more]
TDH_SHESR1.852e-2135.22L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESM1.852e-2135.22L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_SHESA1.852e-2135.22L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC05801B08SK FerrChloL1 Citrus clementina cDNA clone C05801B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296641 ID=CX296641; Name=CX296641; organism=Citrus clementina; type=EST; length=711bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCCCATATCCAGAATCAGAATA
AATGGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTT
GTGTTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAA
GGAGAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGG
TGTCAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCAT
ATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTG
CATTATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTAT
GGTGATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGG
TGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGC
TGCTGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGA
GATGAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGG
TGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTG
GAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCG
CCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGC
CCATAGGACTT
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