CX296642

Overview
NameCX296642
Unique NameCX296642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.594e-30
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -2
Query:  171 RRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 377
            RRLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  259 RRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          

HSP 2 Score: 73.559 bits (179), Expect = 5.594e-30
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            + +NY YG     +G +LLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI
Sbjct:  192 ISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVI 245          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.286e-30
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = -1
Query:  412 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 573
            L +NY YG     +G +LLNNPDL++ DPV++FK+AIWFWMT Q PKPSCH VI+
Sbjct:  188 LSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIV 242          

HSP 2 Score: 73.9442 bits (180), Expect = 7.286e-30
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = -2
Query:  207 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 386
            R   R+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  252 RAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.484e-30
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = -2
Query:  171 RRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 377
            RRLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  258 RRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          

HSP 2 Score: 73.559 bits (179), Expect = 9.484e-30
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            + +NY YG     +G +LLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI
Sbjct:  191 ISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVI 244          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.616e-29
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  412 VGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 537
            VG++L+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII
Sbjct:  140 VGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVII 181          

HSP 2 Score: 74.3294 bits (181), Expect = 1.616e-29
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  207 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 374
            R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  195 RVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.027e-29
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  207 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 374
            R+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  266 RVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          

HSP 2 Score: 72.4034 bits (176), Expect = 4.027e-29
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  394 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI----IENGNHQ 573
            + +NY YG     +G  LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+      NGN Q
Sbjct:  198 ISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQ 262          

HSP 3 Score: 20.4014 bits (41), Expect = 4.027e-29
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = -2
Query:  567 RGPIQLSWN 593
            RGPIQ+S+N
Sbjct:  193 RGPIQISYN 201          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.835e-29
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = -2
Query:  207 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 374
            R+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  264 RVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          

HSP 2 Score: 69.3218 bits (168), Expect = 7.835e-29
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            L  NY YG     + E+L+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI
Sbjct:  196 LTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVI 249          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.863e-29
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = -2
Query:  207 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 386
            R   R PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  206 RAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          

HSP 2 Score: 73.559 bits (179), Expect = 7.863e-29
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            L  NY YG     +G +LL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI
Sbjct:  142 LSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVI 195          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.025e-28
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  412 VGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 537
            VG+EL+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII
Sbjct:  140 VGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVII 181          

HSP 2 Score: 71.2478 bits (173), Expect = 1.025e-28
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = -2
Query:  207 RLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 374
            R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  195 RVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 6.468e-28
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            L  NY YG     +G +LL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI
Sbjct:  194 LSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVI 247          

HSP 2 Score: 72.0182 bits (175), Expect = 6.468e-28
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  207 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 386
            R   R+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  258 RAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.100e-27
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  207 RKRRRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 386
            R   R+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  206 RAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          

HSP 2 Score: 72.0182 bits (175), Expect = 1.100e-27
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  415 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVI 573
            L  NY YG     +G +LL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI
Sbjct:  142 LSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVI 195          
The following BLAST results are available for this feature:
BLAST of CX296642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHIT_PHAVU5.594e-3050.72Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_BRANA7.286e-3061.82Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU9.484e-3050.72Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIA_SOLCI1.616e-2973.81Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI1_ORYSJ4.027e-2955.36Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA7.835e-2957.14Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE7.863e-2953.33Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SOLLC1.025e-2876.19Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_HORVU6.468e-2862.9626 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU1.100e-2751.6726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05801B09SK FerrChloL1 Citrus clementina cDNA clone C05801B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296642 ID=CX296642; Name=CX296642; organism=Citrus clementina; type=EST; length=609bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCTCATTGATCCATGTTGGATC
AGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTAGTTGTCCAC
CTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTA
TTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAGATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACA
GCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCGGCGTTTACGTCATTTGCTGATGG
TTTCCATTCTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGC
AGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTAG
CAAGAAGGTCTGGATTGTTCAACAACTCCTCTCCTACCCTAGGCTTCTCC
GCACCGTAGTAATTGAATTCCAAGAGAGTTGAATTGGACCTCGGCATAGT
ACTTCCCTC
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