CX296642

Overview
NameCX296642
Unique NameCX296642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:495..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 45.4394 bits (106), Expect = 4.088e-12
Identity = 20/47 (42.55%), Postives = 28/47 (59.57%), Query Frame = -2 
Query:  225 GYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 365
            G+G T   ING +EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  223 GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268

HSP 2 Score: 41.2022 bits (95), Expect = 4.088e-12
Identity = 17/46 (36.96%), Postives = 30/46 (65.22%), Query Frame = -1 
Query:  439 LEFNY-YGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPP 573
            L +NY YGA    +   LL  P+L++++P ++F++ +WFWM +  P
Sbjct:  173 LSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218

HSP 3 Score: 24.6386 bits (52), Expect = 4.088e-12
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -2 
Query:  567 RGPIQLSWN 593
            RGPIQLSWN
Sbjct:  168 RGPIQLSWN 176
[Close]
BLAST of CX296642 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = -1 
Query:  412 PRSNSTLLEFNYYGAEKPRVGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVII 594
            PR    L     YG     +GE+L+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++
Sbjct:  238 PRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL 298
The following BLAST results are available for this feature:
BLAST of CX296642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHI4_BRANA4.088e-1242.55Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
AGI_URTDI2.931e-1144.26Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05801B09SK FerrChloL1 Citrus clementina cDNA clone C05801B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296642 ID=CX296642; Name=CX296642; organism=Citrus clementina; type=EST; length=609bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGCTCATTGATCCATGTTGGATC
AGTCTTATTTAATTTACTTACAATAAGAGCGTAACAGTTTAGTTGTCCAC
CTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTA
TTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAGATT
AAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACA
GCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCGGCGTTTACGTCATTTGCTGATGG
TTTCCATTCTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGC
AGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTAG
CAAGAAGGTCTGGATTGTTCAACAACTCCTCTCCTACCCTAGGCTTCTCC
GCACCGTAGTAATTGAATTCCAAGAGAGTTGAATTGGACCTCGGCATAGT
ACTTCCCTC
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