CX296663

Overview
NameCX296663
Unique NameCX296663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296663_ssr408 microsatellite CX296663_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  466 AGLDPAILRKIPVVAF--NQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            AGLD  +++KI       +Q  FK +G +C++CL E  + E  RLLPKCNH FHV CID W +SHS CPL
Sbjct:  152 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPL 221          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  442 QDPAVT----LRA-GLDPAILRKIPVVAFNQQ-DFKDGL--------------ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            QDP +     LR+ GLD +++R IP+  F ++ D  DG+              EC+VCLSE +D EK R++P C+H FH++CID+W Q+++ CPL
Sbjct:   84 QDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPL 178          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GL  + +  I VV F + +   DG EC+VCL+E E+ E  RLLPKC+H FH+ CID W  SH  CPL
Sbjct:  109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPL 175          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663
            GL    L++IPV  +     D K   EC +CL + EDGEK R+LPKCNHGFHV CID W  S S+CP
Sbjct:   88 GLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCP 153          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQDFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLDP I+R  PV  ++    K+ G ECA+CLSE  D +  RL+  C H FH  CID+WF+ H TCP+
Sbjct:   77 GLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPV 143          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  466 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            +GLD A++  +PV  + + +  K+  +CAVCL E  + +K RLLP C+H FH++CID W  S+STCPL
Sbjct:  117 SGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPL 184          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  442 QDPAVTLRAGLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663
            Q P      GL   +L+ +P + F+ +  + +   ECA+CL+E   G++ R+LP+C HGFHV CID W  SHS+CP
Sbjct:   75 QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCP 150          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAF--NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLD +++  IP+  +  N+++  +  EC +CL   E G+  R L  C HGFHVECIDMW  SHSTCPL
Sbjct:  111 GLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPL 178          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQDF--------KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLD + +R IPV  F ++D         K+  EC+VCL+E ++ EK R++P C H FH++CID+W Q ++ CPL
Sbjct:  101 GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPL 174          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  451 AVTLRAGLDPAILRKIPVVAFNQQDFK----DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            ++T   GLD AI+   P   +++   +     G+ECAVC+ E ED E  RL+P+C H FH +C+ +W   HSTCPL
Sbjct:   61 SITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPL 136          
The following BLAST results are available for this feature:
BLAST of CX296663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ATL4H_ARATH3.328e-1451.43Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL5K_ARATH7.414e-1441.05RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL5F_ARATH7.414e-1450.75RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3C_ARATH7.414e-1453.73RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL2H_ARATH7.414e-1449.25RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL1D_ARATH7.414e-1447.06RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL1B_ARATH1.265e-1342.11RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL5O_ARATH1.652e-1348.53RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
ATL1A_ARATH1.652e-1343.24RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL2F_ARATH3.679e-1342.11RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC05801D08SK FerrChloL1 Citrus clementina cDNA clone C05801D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296663 ID=CX296663; Name=CX296663; organism=Citrus clementina; type=EST; length=667bp
CCGAATTCGGAACGAGGGAATCTTTCTTCCTTTCTTGTGAAGTGATCAGC
GGATCACTTCCTCGTTATTAAAGCCACCATATTTAAGAAACACAAATCCA
ACTTTTGCACCCTTATCAAAACTAAAAACTTCTTTCGTTTCTTGTATAAA
GTTTCTCTCGTTCCGACACAAGCACACAAAAATCCTCATCTGGGTTTGTT
TTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGAAAATGGATTTA
ACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGGTGATAGCAATA
ATTGTTCTCTTTTTCGTAGTGATCTTTATTCTGTTTCTTCACCTGTACGC
CAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACCTTCTCCCAGTC
GTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCGGGCAGGACCCT
GCTGTCACTCTCCGAGCTGGGCTTGATCCTGCAATCCTGAGGAAAATCCC
TGTGGTTGCATTCAACCAACAGGACTTTAAAGATGGACTTGAATGTGCAG
TGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGCTGCTGCCGAAA
TGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGGTTTCAGTCTCA
CTCAACTTGCCCTCTCT
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