CX296663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14 Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 Query: 466 AGLDPAILRKIPVVAF--NQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 AGLD +++KI +Q FK +G +C++CL E + E RLLPKCNH FHV CID W +SHS CPL Sbjct: 152 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPL 221
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 442 QDPAVT----LRA-GLDPAILRKIPVVAFNQQ-DFKDGL--------------ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 QDP + LR+ GLD +++R IP+ F ++ D DG+ EC+VCLSE +D EK R++P C+H FH++CID+W Q+++ CPL Sbjct: 84 QDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPL 178
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 GL + + I VV F + + DG EC+VCL+E E+ E RLLPKC+H FH+ CID W SH CPL Sbjct: 109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPL 175
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663 GL L++IPV + D K EC +CL + EDGEK R+LPKCNHGFHV CID W S S+CP Sbjct: 88 GLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCP 153
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFNQQDFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 GLDP I+R PV ++ K+ G ECA+CLSE D + RL+ C H FH CID+WF+ H TCP+ Sbjct: 77 GLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPV 143
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14 Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 Query: 466 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 +GLD A++ +PV + + + K+ +CAVCL E + +K RLLP C+H FH++CID W S+STCPL Sbjct: 117 SGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPL 184
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 442 QDPAVTLRAGLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663 Q P GL +L+ +P + F+ + + + ECA+CL+E G++ R+LP+C HGFHV CID W SHS+CP Sbjct: 75 QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCP 150
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAF--NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 GLD +++ IP+ + N+++ + EC +CL E G+ R L C HGFHVECIDMW SHSTCPL Sbjct: 111 GLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPL 178
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 469 GLDPAILRKIPVVAFNQQDF--------KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 GLD + +R IPV F ++D K+ EC+VCL+E ++ EK R++P C H FH++CID+W Q ++ CPL Sbjct: 101 GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPL 174
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13 Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 451 AVTLRAGLDPAILRKIPVVAFNQQDFK----DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666 ++T GLD AI+ P +++ + G+ECAVC+ E ED E RL+P+C H FH +C+ +W HSTCPL Sbjct: 61 SITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPL 136 The following BLAST results are available for this feature:
BLAST of CX296663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296663 ID=CX296663; Name=CX296663; organism=Citrus clementina; type=EST; length=667bpback to top |