CX296663

Overview
NameCX296663
Unique NameCX296663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296663_ssr408 microsatellite CX296663_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5672 contig Ccv1_Contig5672:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLD +I+   P   ++        K+ LEC+VCL+E ED E  RL+PKC H FH  CID W +SH+TCPL
Sbjct:  115 GLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPL 184          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLD +++   P   ++    Q+  K  LECA+CL+E ED E  RLLPKC+H FH  CID W ++H TCP+
Sbjct:   99 GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPV 168          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  457 TLRAGLDPAILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            T+  GLD   +   P   ++    Q+  K  LECA+CL+E ED E  RLLPKC+H FH  CI  W Q H TCP+
Sbjct:   91 TVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPV 164          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLDPA +R +PVV   ++  + ++  EC +CL   E+GEK ++LP C+H +H EC+D W ++ S+CPL
Sbjct:   80 GLDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPL 147          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  457 TLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            + R GLD   +R +PV  + +   +   +C +CLS+ E+GE  +++P C H FHV+C+D W  S+ TCPL
Sbjct:  111 SFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPL 180          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  448 PAVTLRAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCP 663
            P      GL   +LR +P + ++      +  +ECA+CL+E   G++ R+LP+C HGFHV CID W  SHS+CP
Sbjct:   70 PVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCP 143          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GL  +I+  I +  + + D   +  +C VCL+E E+ E  RLLPKCNH FH+ CID W  SH+ CPL
Sbjct:  151 GLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPL 217          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  430 FAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            F P  +   T   GL   I   +P+V + +    +  +C+VCL + +  EK + +P C H FH+ECID+W  SH+TCPL
Sbjct:   59 FVPTNNNLSTAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPL 137          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  430 FAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            F P  +   T   GL   I   +PVV + +       +C+VCL + +  EK + +P C H FH+ECID+W  SH+TCPL
Sbjct:   73 FVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPL 151          
BLAST of CX296663 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  469 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPL 666
            GLD   +   P   +++       K G+ECAVCL E ED E  RL+P C H FH +C+D+W   HSTCPL
Sbjct:  106 GLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPL 175          
The following BLAST results are available for this feature:
BLAST of CX296663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ATL1N_ARATH3.679e-1348.57RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL3B_ARATH4.806e-1347.14RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL5H_ARATH6.276e-1345.95RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3D_ARATH6.276e-1344.12RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ATL2E_ARATH6.276e-1340.00RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL1R_ARATH6.276e-1341.89RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL1O_ARATH6.276e-1346.27RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL4F_ARATH1.071e-1237.97RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL4E_ARATH1.071e-1239.24RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]
ATL2G_ARATH1.071e-1245.71RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC05801D08SK FerrChloL1 Citrus clementina cDNA clone C05801D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296663 ID=CX296663; Name=CX296663; organism=Citrus clementina; type=EST; length=667bp
CCGAATTCGGAACGAGGGAATCTTTCTTCCTTTCTTGTGAAGTGATCAGC
GGATCACTTCCTCGTTATTAAAGCCACCATATTTAAGAAACACAAATCCA
ACTTTTGCACCCTTATCAAAACTAAAAACTTCTTTCGTTTCTTGTATAAA
GTTTCTCTCGTTCCGACACAAGCACACAAAAATCCTCATCTGGGTTTGTT
TTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGAAAATGGATTTA
ACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGGTGATAGCAATA
ATTGTTCTCTTTTTCGTAGTGATCTTTATTCTGTTTCTTCACCTGTACGC
CAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACCTTCTCCCAGTC
GTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCGGGCAGGACCCT
GCTGTCACTCTCCGAGCTGGGCTTGATCCTGCAATCCTGAGGAAAATCCC
TGTGGTTGCATTCAACCAACAGGACTTTAAAGATGGACTTGAATGTGCAG
TGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGCTGCTGCCGAAA
TGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGGTTTCAGTCTCA
CTCAACTTGCCCTCTCT
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