CX296670

Overview
NameCX296670
Unique NameCX296670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11294 contig Ccv1_Contig11294:305..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296670 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  106 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 243
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48
The following BLAST results are available for this feature:
BLAST of CX296670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RUB1_ARATH9.737e-1163.04NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC05801E05SK FerrChloL1 Citrus clementina cDNA clone C05801E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296670 ID=CX296670; Name=CX296670; organism=Citrus clementina; type=EST; length=244bp
ATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAA
CATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAA
TGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCCTGGAGGTG
GAGAGCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGA
GGGGATTCCTCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGC
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