CX296676

Overview
NameCX296676
Unique NameCX296676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig701 contig Ccv1_Contig701:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNJB (50S ribosomal protein L31 OS=Synechococcus sp. GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 319
            KK +HPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +VEKF +K+G
Sbjct:    3 KKGLHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVEKFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_PROM4 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K+DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KEDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNS9 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9902) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNJA (50S ribosomal protein L31 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 319
            KK IHPQ+Y +AKV CNGE+VMT G T+ E  VDVWSGNH F+ G  S  ++D++ +V+KF +K+G
Sbjct:    3 KKGIHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVDKFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_PROMM (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_PROM3 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPNWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNSC (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9605) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGATQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNS3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain CC9311) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEINVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_SYNPX (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH8102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 319
            K DIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_CYAP8 (50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 8801) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.319e-14
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  125 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGE 361
            K DIHP +Y +AK+ CNGE+VMT G TQ E  V+VWSGNH FY G +  +  +  ++++F++++G L +    P  KG+
Sbjct:    3 KADIHPTWYPEAKIICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RIDRFQKRYGNLGKGGSKPNKKGD 80          
The following BLAST results are available for this feature:
BLAST of CX296676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_SYNJB1.359e-1456.0650S ribosomal protein L31 OS=Synechococcus sp. GN=... [more]
RL31_PROM41.359e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNS91.775e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNJA1.775e-1456.0650S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMM1.775e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM31.775e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNSC2.319e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNS32.319e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNPX2.319e-1455.3850S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_CYAP82.319e-1444.3050S ribosomal protein L31 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05801E11SK FerrChloL1 Citrus clementina cDNA clone C05801E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296676 ID=CX296676; Name=CX296676; organism=Citrus clementina; type=EST; length=558bp
GCCGAATTCGGCACGAGGCACATTCTTCCAAATCAAACCCTCTGCTCCAA
TTCTCCCCACCAGAAAGGTGAAGAACTGCGCAGCAACGGGCAGTGGTTAC
AGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTA
CGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACGGGTG
GGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTT
TACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAA
GTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGC
TTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGCTAAA
GGTGGCAAGAAGAAGTAGAAATTTGGTACGGCGTTGTTTTGAGGTAATTG
GGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGAT
ATTTGAACGACAAACATTATTATCAAATTATATTTTTCAAAAAAAGGGGG
GGCCCGGT
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