CX296676

Overview
NameCX296676
Unique NameCX296676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig701 contig Ccv1_Contig701:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296676 vs. ExPASy Swiss-Prot
Match: RL31_MICAN (50S ribosomal protein L31 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  128 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 316
            K IHP +Y +AKV CNGELVMT G T+ E  V+VWSGNH FY G +  +  +  +V++F +K+
Sbjct:    3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKY 64
The following BLAST results are available for this feature:
BLAST of CX296676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_MICAN6.314e-1250.7950S ribosomal protein L31 OS=Microcystis aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionC05801E11SK FerrChloL1 Citrus clementina cDNA clone C05801E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296676 ID=CX296676; Name=CX296676; organism=Citrus clementina; type=EST; length=558bp
GCCGAATTCGGCACGAGGCACATTCTTCCAAATCAAACCCTCTGCTCCAA
TTCTCCCCACCAGAAAGGTGAAGAACTGCGCAGCAACGGGCAGTGGTTAC
AGGACCCGGGCGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTA
CGAGGATGCAAAAGTGTACTGTAACGGTGAGCTCGTAATGACGACGGGTG
GGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTT
TACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAA
GTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGC
TTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCGCTAAA
GGTGGCAAGAAGAAGTAGAAATTTGGTACGGCGTTGTTTTGAGGTAATTG
GGGAATGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGAT
ATTTGAACGACAAACATTATTATCAAATTATATTTTTCAAAAAAAGGGGG
GGCCCGGT
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