CX296690

Overview
NameCX296690
Unique NameCX296690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:356..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.224e-46
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V   WTETDFRTGE PWW+
Sbjct:   72 SHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          

HSP 2 Score: 22.3274 bits (46), Expect = 7.224e-46
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            TAKD +GND+  + +L    +G
Sbjct:   55 TAKDELGNDVSVSKFLESHNVG 76          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.415e-46
Identity = 77/109 (70.64%), Postives = 90/109 (82.57%), Query Frame = -1
Query:  334 NTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 660
            +TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+TDFRTGE PWWA
Sbjct:   70 STHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          

HSP 2 Score: 23.8682 bits (50), Expect = 9.415e-46
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN + A+ WL+    G
Sbjct:   54 SAKDELGNAVTASGWLSTHPAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.599e-45
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = -1
Query:  334 GDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 645
            GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APWWA
Sbjct:   76 GDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          

HSP 2 Score: 21.9422 bits (45), Expect = 1.599e-45
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            TAKD +GND+  + +L     G
Sbjct:   55 TAKDELGNDVSLSKFLENRNAG 76          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.084e-45
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = -1
Query:  334 GDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 645
            GDR L +GLKGDPTY+VV+  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH N+ + K+V  PWTETDFRTG+APWW+
Sbjct:   76 GDRNLVQGLKGDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNVSDDKIVLTPWTETDFRTGDAPWWS 179          

HSP 2 Score: 21.9422 bits (45), Expect = 2.084e-45
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            TAKD +GND+    +L     G
Sbjct:   55 TAKDELGNDVSVTKFLENRNAG 76          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.705e-45
Identity = 78/108 (72.22%), Postives = 90/108 (83.33%), Query Frame = -1
Query:  337 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 657
            T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G V F PWTETDFRT  APWW
Sbjct:  133 TXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          

HSP 2 Score: 23.8682 bits (50), Expect = 2.705e-45
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA GNDI    WL
Sbjct:  117 AKDAAGNDIKVEKWL 131          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.716e-45
Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  334 NTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 660
            ++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   70 SSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          

HSP 2 Score: 24.2534 bits (51), Expect = 2.716e-45
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -2
Query:  657 TAKDAIGNDIIAADWLT 707
            +AKD +GN I A+ WL+
Sbjct:   54 SAKDELGNPITASGWLS 70          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.604e-45
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 657
            TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  W+ETDFRTG  PWWA
Sbjct:   98 THQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          

HSP 2 Score: 25.7942 bits (55), Expect = 4.604e-45
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = -2
Query:  660 AKDAIGNDIIAADWL 704
            AKDA+GNDI A  WL
Sbjct:   82 AKDALGNDIKANAWL 96          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.613e-45
Identity = 74/108 (68.52%), Postives = 91/108 (84.26%), Query Frame = -1
Query:  337 NTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 660
            +TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   70 STHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          

HSP 2 Score: 25.0238 bits (53), Expect = 4.613e-45
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -2
Query:  642 AKDAIGNDIIAADWLTRTALG 704
            AKD +GN++ A+ WL+   +G
Sbjct:   55 AKDELGNNVSASGWLSTHPVG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.613e-45
Identity = 74/108 (68.52%), Postives = 91/108 (84.26%), Query Frame = -1
Query:  337 NTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 660
            +TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   70 STHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          

HSP 2 Score: 25.0238 bits (53), Expect = 4.613e-45
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -2
Query:  642 AKDAIGNDIIAADWLTRTALG 704
            AKD +GN++ A+ WL+   +G
Sbjct:   55 AKDELGNNVSASGWLSTHPVG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = -1
Query:  337 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 657
            +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA +++  +V  PWTETDFRTGE PWW
Sbjct:   72 SHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
The following BLAST results are available for this feature:
BLAST of CX296690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ANASP7.224e-4672.22Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNPW9.415e-4670.64Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP1.599e-4574.04Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_NOSP72.084e-4572.12Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRIB_CYAPA2.705e-4572.22Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_SYNSC2.716e-4568.81Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_VOLCA4.604e-4571.56Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_PROMT4.613e-4568.52Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM14.613e-4568.52Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_MASLA5.373e-4570.09Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801G02SK FerrChloL1 Citrus clementina cDNA clone C05801G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296690 ID=CX296690; Name=CX296690; organism=Citrus clementina; type=EST; length=708bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGTTTTGATGAGATAATAGAATT
AATTTTTACTTAATAAATGATAAAAACTTATATCCAACGTTGAAGCTGTA
GCATTACATTGTTGAGCGTATGAATTTTTGAGATACAAAGAATGAATGGA
TAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGATAGCATGATTCAAG
CCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGATAAAGCATGTTCCGT
TACAGTATGTTTATGCAGTACGGCAAAGCAAACCGACCGGCCAAAACTTG
AATATTGAAAGCACAGGCACCGGAACAAGTTTAAGCCCACCATGGAGCTT
CACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGAAGACTACCTTACCA
TTTTCAATGTTGGCATGAGCCAATGCCAATGACAATGGAGCAGGCCCTCT
CACAACTCTTCCTTGGTTATTGTATTGGGATCCGTGGCAGGGACAGATGA
ACTTGTTCTCAGCTGAATTCCATGGCACCACACATCCAAGGTGAGTGCAG
ACAGCATTGATTCCATATGATGCAAGTGTTTTGTCTTTTTCCACAACAAG
GTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGTTCGGTCCCCAGGGC
CGTGCGTGTTAGCCAATCAGCGGCAATGATGTCATTGCCAATGGCATCCT
TGGCAGTA
back to top