CX296690

Overview
NameCX296690
Unique NameCX296690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:356..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.458e-42
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 21.557 bits (44), Expect = 3.458e-42
Identity = 8/22 (36.36%), Postives = 11/22 (50.00%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN +    WL     G
Sbjct:   54 SAKDELGNPVTKTGWLATHQAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.458e-42
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 21.9422 bits (45), Expect = 3.458e-42
Identity = 9/22 (40.91%), Postives = 11/22 (50.00%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN I    WL     G
Sbjct:   54 SAKDELGNPITKTGWLATHQAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.506e-42
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   71 THQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 21.9422 bits (45), Expect = 4.506e-42
Identity = 9/22 (40.91%), Postives = 11/22 (50.00%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN I    WL     G
Sbjct:   54 SAKDELGNPITKTGWLATHQAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 9.970e-42
Identity = 72/111 (64.86%), Postives = 89/111 (80.18%), Query Frame = -1
Query:  334 LANTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 666
            LAN H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   69 LAN-HQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 21.9422 bits (45), Expect = 9.970e-42
Identity = 8/22 (36.36%), Postives = 11/22 (50.00%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN +    WL     G
Sbjct:   54 SAKDELGNPVTKTGWLANHQAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.693e-41
Identity = 69/108 (63.89%), Postives = 87/108 (80.56%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   71 SHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          

HSP 2 Score: 21.557 bits (44), Expect = 1.693e-41
Identity = 8/22 (36.36%), Postives = 11/22 (50.00%), Query Frame = -2
Query:  642 TAKDAIGNDIIAADWLTRTALG 707
            +AKD +GN +    WL     G
Sbjct:   54 SAKDELGNPVTKTGWLASHQAG 75          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = -1
Query:  334 THGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 657
            +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:  144 SHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = -1
Query:  358 LANTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 666
            L  TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  358 LANTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 666
            L  TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   69 LLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.420e-29
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -1
Query:  337 PGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 648
            PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   74 PGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  337 PGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 648
            P  R L  GL G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:   74 PQTRALVAGLAGEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
The following BLAST results are available for this feature:
BLAST of CX296690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM93.458e-4266.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM23.458e-4266.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM04.506e-4266.67Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM59.970e-4264.86Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP1.693e-4163.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA6.796e-4066.06Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJA2.589e-3159.22Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJB5.767e-3159.22Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY31.420e-2952.88Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRIC_ANASP1.202e-2851.92Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05801G02SK FerrChloL1 Citrus clementina cDNA clone C05801G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296690 ID=CX296690; Name=CX296690; organism=Citrus clementina; type=EST; length=708bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGTTTTGATGAGATAATAGAATT
AATTTTTACTTAATAAATGATAAAAACTTATATCCAACGTTGAAGCTGTA
GCATTACATTGTTGAGCGTATGAATTTTTGAGATACAAAGAATGAATGGA
TAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGATAGCATGATTCAAG
CCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGATAAAGCATGTTCCGT
TACAGTATGTTTATGCAGTACGGCAAAGCAAACCGACCGGCCAAAACTTG
AATATTGAAAGCACAGGCACCGGAACAAGTTTAAGCCCACCATGGAGCTT
CACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGAAGACTACCTTACCA
TTTTCAATGTTGGCATGAGCCAATGCCAATGACAATGGAGCAGGCCCTCT
CACAACTCTTCCTTGGTTATTGTATTGGGATCCGTGGCAGGGACAGATGA
ACTTGTTCTCAGCTGAATTCCATGGCACCACACATCCAAGGTGAGTGCAG
ACAGCATTGATTCCATATGATGCAAGTGTTTTGTCTTTTTCCACAACAAG
GTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGTTCGGTCCCCAGGGC
CGTGCGTGTTAGCCAATCAGCGGCAATGATGTCATTGCCAATGGCATCCT
TGGCAGTA
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