CX296690

Overview
NameCX296690
Unique NameCX296690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14243 contig Ccv1_Contig14243:356..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  337 PGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR-----TGEAPWW 648
            PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A + + KV+  PWTE DFR       + P+W
Sbjct:   73 PGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIB_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  337 GDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 645
            G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L H  +++  +    W ETD RTGE PWW
Sbjct:   75 GTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVHVQVKDDYIWISSWQETDPRTGEKPWW 177          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRIB_ANASP (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=petC2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  337 GDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 645
            G R L  GL G+PTYL V +D TL   GI   CTHLGC  PWN  + +F CPCHGS+Y+ QG V RGPA   L L    +++  +   PW ETD RTGE PWW
Sbjct:   75 GTRALIAGLAGEPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQQFQCPCHGSRYDAQGSVERGPANRPLKLVQVQVKDDYIWISPWQETDPRTGEKPWW 177          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_CHLTE (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium tepidum GN=petC PE=3 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = -1
Query:  388 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 612
            D   +VV    +L +  ++A+CTHLGC+V W+ A +   CPCHG++Y   G+++ GP PL L      IE+GK+V
Sbjct:  105 DDKVIVVNHGGSLTA--VSAICTHLGCLVHWDEAADMIACPCHGAKYTQDGKIISGPQPLPLKQYKVKIEDGKIV 177          
BLAST of CX296690 vs. ExPASy Swiss-Prot
Match: UCRI_CHLLT (Cytochrome b6-f complex iron-sulfur subunit OS=Chlorobium limicola f.sp. thiosulfatophilum GN=petC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = -1
Query:  388 LVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVV 600
            +VV K   L +  ++AVCTHLGC+V W  A+N++ CPCHG++Y   G ++ GP PL L    A IE   ++
Sbjct:  109 IVVNKGGALTA--VSAVCTHLGCLVNWVDADNQYFCPCHGAKYKLTGEIISGPQPLPLKQYKARIEGDSII 177          
The following BLAST results are available for this feature:
BLAST of CX296690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_GLOVI7.794e-2851.79Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIB_ANAVT8.617e-2752.43Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRIB_ANASP8.617e-2752.43Cytochrome b6-f complex iron-sulfur subunit 2 OS=A... [more]
UCRI_CHLTE9.250e-1341.33Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]
UCRI_CHLLT2.061e-1243.66Cytochrome b6-f complex iron-sulfur subunit OS=Chl... [more]

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Properties
Property NameValue
Genbank descriptionC05801G02SK FerrChloL1 Citrus clementina cDNA clone C05801G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296690 ID=CX296690; Name=CX296690; organism=Citrus clementina; type=EST; length=708bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGTTTTGATGAGATAATAGAATT
AATTTTTACTTAATAAATGATAAAAACTTATATCCAACGTTGAAGCTGTA
GCATTACATTGTTGAGCGTATGAATTTTTGAGATACAAAGAATGAATGGA
TAAGAGAAAATTGTCAAGATTGCCAAGATTACAAGATAGCATGATTCAAG
CCAAGTAGCTTTACATGTTGTAAGCTTCATTCTGATAAAGCATGTTCCGT
TACAGTATGTTTATGCAGTACGGCAAAGCAAACCGACCGGCCAAAACTTG
AATATTGAAAGCACAGGCACCGGAACAAGTTTAAGCCCACCATGGAGCTT
CACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGAAGACTACCTTACCA
TTTTCAATGTTGGCATGAGCCAATGCCAATGACAATGGAGCAGGCCCTCT
CACAACTCTTCCTTGGTTATTGTATTGGGATCCGTGGCAGGGACAGATGA
ACTTGTTCTCAGCTGAATTCCATGGCACCACACATCCAAGGTGAGTGCAG
ACAGCATTGATTCCATATGATGCAAGTGTTTTGTCTTTTTCCACAACAAG
GTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGTTCGGTCCCCAGGGC
CGTGCGTGTTAGCCAATCAGCGGCAATGATGTCATTGCCAATGGCATCCT
TGGCAGTA
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