CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.709e-60
Identity = 116/213 (54.46%), Postives = 156/213 (73.24%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  +DEALVSAA+LS++Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+++ Q+  EK+ AV  Q+FE A  LRD++  L+ Q        K      T+ GD    ++E DI  +++ WTGIP+ K++  ESDRLL +E+TLH RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEANTNWK-----NTQNGD-NTSLSEEDIGEVIAGWTGIPLTKINETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.481e-60
Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  +DEAL +AA+LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     D   E   A+   G +   ++E +I  +++ WTGIP+ K++  ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.481e-60
Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  +DEAL +AA+LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     D   E   A+   G +   ++E +I  +++ WTGIP+ K++  ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.180e-59
Identity = 113/213 (53.05%), Postives = 154/213 (72.30%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI ILKGLR+RYE HH++  +DEAL +AA+LS  Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      T  GD    +++ DI  +++ WTGIP+ K++  ESDRLL +E+TLH RVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TIAILKGLRDRYEAHHRINISDEALEAAAKLSDCYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEDAKNEWK------TTQGDQSTSLSKEDIGEVIAGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.563e-58
Identity = 115/216 (53.24%), Postives = 157/216 (72.69%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R    P + RE ++++ +  +EK  A+  QDFEKA  LRDRE  L AQ        +   + +  +GD+  V+ EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK++
Sbjct:  355 TIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKQLVAQ--------RAEREKQWRSGDL-DVIAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.654e-58
Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R    P + RE ++++ +  +EK  A+  QDFEKA  LRDRE  L AQ        +   + +  +GD+  VV EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK++
Sbjct:  355 TIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.654e-58
Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR+RYE HH++  TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R    P + RE ++++ +  +EK  A+  QDFEKA  LRDRE  L AQ        +   + +  +GD+  VV EVD   I  ++  WTGIPV K++  E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP  SFIF+GP+GVGK++
Sbjct:  355 TIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPC_STAS11.709e-6054.46ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES8.481e-6053.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ8.481e-6053.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ7.180e-5953.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCLE3.563e-5853.24Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCTU4.654e-5853.70Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO4.654e-5853.70Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_STAAW3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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