CX296693
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.709e-60 Identity = 116/213 (54.46%), Postives = 156/213 (73.24%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ +DEALVSAA+LS++Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+++ Q+ EK+ AV Q+FE A LRD++ L+ Q K T+ GD ++E DI +++ WTGIP+ K++ ESDRLL +E+TLH RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEANTNWK-----NTQNGD-NTSLSEEDIGEVIAGWTGIPLTKINETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.481e-60 Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ +DEAL +AA+LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q D E A+ G + ++E +I +++ WTGIP+ K++ ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.481e-60 Identity = 114/213 (53.52%), Postives = 157/213 (73.71%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ +DEAL +AA+LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q D E A+ G + ++E +I +++ WTGIP+ K++ ESDRLL +E+TLHKRVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYE---DAKNEWKNAQ---GGLDTALSEENIAEVIAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 7.180e-59 Identity = 113/213 (53.05%), Postives = 154/213 (72.30%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI ILKGLR+RYE HH++ +DEAL +AA+LS Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q ++ K T GD +++ DI +++ WTGIP+ K++ ESDRLL +E+TLH RVIGQ++AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TIAILKGLRDRYEAHHRINISDEALEAAAKLSDCYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEDAKNEWK------TTQGDQSTSLSKEDIGEVIAGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2) HSP 1 Score: 224.557 bits (571), Expect = 3.563e-58 Identity = 115/216 (53.24%), Postives = 157/216 (72.69%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+ QDFEKA LRDRE L AQ + + + +GD+ V+ EVD I ++ WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFIF+GP+GVGK++ Sbjct: 355 TIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKQLVAQ--------RAEREKQWRSGDL-DVIAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 4.654e-58 Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+ QDFEKA LRDRE L AQ + + + +GD+ VV EVD I ++ WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFIF+GP+GVGK++ Sbjct: 355 TIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 4.654e-58 Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVD---IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 TI+ILKGLR+RYE HH++ TD A+V+AA L+ +YI+DRFLPDKAIDLIDEAG+R+R+R P + RE ++++ + +EK A+ QDFEKA LRDRE L AQ + + + +GD+ VV EVD I ++ WTGIPV K++ E+ RLL+MEE LHKR+IGQ++AVKA+S+AIRR R GLK+P RP SFIF+GP+GVGK++ Sbjct: 355 TIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLREFDEKIAEARREKESAIDAQDFEKAASLRDREKTLVAQ--------RAEREKQWRSGDL-DVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 561
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57 Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 T+ ILKGLR+RYE HH++ +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57 Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 T+ ILKGLR+RYE HH++ +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57 Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2 Query: 8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646 T+ ILKGLR+RYE HH++ +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+ P +E+E+E+ ++ EK+ AV Q+FE A LRD++ L+ Q ++ K + + ++E DI +++ WTGIP+ K++ ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++ Sbjct: 347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553 The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 195
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bpback to top |