CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:256..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 108/213 (50.70%), Postives = 155/213 (72.77%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      T+ G +   ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWK-----NTQNG-MSTSLSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.016e-57
Identity = 106/213 (49.77%), Postives = 153/213 (71.83%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ ILKGLR+RYE HH++  +DEA+ +A +LS +Y+SDRFLPDKAIDLIDEA S+VRL+    P   +E+E+E+ ++  EK+ AV  Q+FE A  LRD++  L+ Q     ++ K      + +      ++E DI  +++ WTGIP+ K++  ES++LL +E+TLH+RVIGQ +AV +IS+A+RRAR GLK+P RPI SFIF GPTGVGK++
Sbjct:  347 TVAILKGLRDRYEAHHRINISDEAIEAAVKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAVHAQEFENAANLRDKQTKLEKQYEEAKNEWKNAQNGMSTS------LSEEDIAEVIAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.267e-55
Identity = 111/220 (50.45%), Postives = 158/220 (71.82%), Query Frame = 2
Query:    2 G*TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI-----SALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            G TI+IL GLR ++E HH L Y D+A+  AA L+ ++I+DRFLPDKAID++DEAGSRVRL + +LP   + L KEL+   ++K E+++  DF+ A +L D EM+++  I     S L ++   +++ E +       V E D+  +++ WTGIPV K+S  ES RLL MEETLH+R+IGQ  A+ ++S+AIRRARVGL+NP+RPIASFIF+GPTGVGK++
Sbjct:  355 GVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFIADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAKQLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDT------VLEGDVAEVIAGWTGIPVNKISDSESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGKTE 568          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.311e-52
Identity = 102/212 (48.11%), Postives = 148/212 (69.81%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS 643
            TI+IL G++ +YE HHK++YTDEA+ +AA LS +YI +R LPDKAIDLIDEAGSR RL +   P+E ++LEK++ ++ ++K   V  Q+FE A ++RD    L+ ++S      K+  K   E   +   + E DI+H++S  T IP++++   ES RL+ MEE LH++V+GQ EA+ +IS+AIRR+R GLK   RP+ SFIF GPTGVGK+
Sbjct:  356 TIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERHLPDKAIDLIDEAGSRARLLNMTRPQEFKDLEKKIEELNQQKKRVVESQNFEDAAKIRDEITSLQEELS------KKEEKCREEREKIETFIEEDDIRHVISEITNIPIKRLLNSESKRLIGMEEELHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGSFIFLGPTGVGKT 561          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.227e-50
Identity = 104/212 (49.06%), Postives = 147/212 (69.34%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS 643
            T++IL+GL+++YE HH +  TDEALV+AA+LS QY+  RFLPDKAIDL+DEAG+RVR+     P E   LE E+    + K +A+  Q++EKA  LRD E  L+ ++S +  +  E +K E +       V E  +  +VS  TGIP  +++  ES++LL +E TL K+VIGQD+AV +I RAIRR+R G+K+PNRP+ SF+F GPTGVGK+
Sbjct:  390 TVEILRGLKKKYEEHHNVFITDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSELLRLEAEIESTKQAKEQAIGTQEYEKAASLRDEEKKLREKLSNMKQQW-ESNKEEHQV-----PVDEEAVAQVVSVQTGIPAARLTEAESEKLLMLENTLQKKVIGQDQAVASICRAIRRSRTGIKDPNRPMGSFLFLGPTGVGKT 595          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.157e-49
Identity = 101/212 (47.64%), Postives = 146/212 (68.87%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS 643
            T++IL+GL+++YE HH +  TDEALV+AA+LS QY+  RFLPDKAIDL+DEAG+RVR+     P +   LE E+ +  + K +A+  Q++EKA  LRD E  L+ ++  +  +  E +K E +       V E  +  +VS  TGIP  +++  ES++LL +E TL K+VIGQ +AV +I RAIRR+R G+K+PNRP+ SF+F GPTGVGK+
Sbjct:  373 TVEILRGLKKKYEEHHNVFITDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSDLVRLEAEIEKTKQAKEQAIGTQEYEKAASLRDEEKKLREKLGNMKQQW-ESNKEEHQV-----PVDEEAVAQVVSVQTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMGSFLFLGPTGVGKT 578          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPC_STAAN3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC3.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB3.016e-5750.70ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA83.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA33.016e-5749.77ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_ODOSI1.267e-5550.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
HLYB_TREHY1.311e-5248.11Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPC_CHLMU1.227e-5049.06Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLTR5.157e-4947.64Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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