CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 110/269 (40.89%), Postives = 153/269 (56.88%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDL-----------------KAQISALVDKGKEMSKAETE------------AGD---------------------------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE HHK+R +D ALV+AA LS +YI+DRFLPDKAIDL+DEA SR+R++    PEE  EL++ + Q+  E+    +  D      LR  E +L                 K ++    D  K + +A  E            AG+                           V  VVT  +I H+VS WTGIPV+K+   + ++LL+ME+ L K V+GQ EAV+A+S+A+RR+R GL++PNRPI SFIF GPTGVGK++
Sbjct:  347 TISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRIIQLKIEREALKQETDQSSVDRLRKLEDELADTEEKADALTARWQAEKQKLGHAADLKKRLDEARNELAIAQRNGQFQRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTE 615          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.086e-46
Identity = 109/269 (40.52%), Postives = 156/269 (57.99%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKA-------GELRDREMDLKAQISALVDKGKEM--------------SKAETEAGDVGPVV-----------TEV------------------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            +I IL+GL+E+YE HHK+R  D+A+++A +LS++YI++RFLPDKAIDL+DEA +R+R+    LPEE  E+ + ++Q+  E+    R  D EK         EL+++E   KAQ     D+  ++               +AE E GD G V            TE+                        DI  IVS WTGIPV ++   E D+LL +E+ LHKRVIGQDEA++A++ A+RR+R GL++P RPI SFIF G TGVGK++
Sbjct:  344 SISILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLPDKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAELKEKEASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAERE-GDYGRVAEIRYGLIKQKETEIDTIQQQLHELQRGGSMIKEEVEADDIADIVSRWTGIPVSRMLQSERDKLLHLEDELHKRVIGQDEAIRAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTE 611          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.970e-46
Identity = 110/268 (41.04%), Postives = 155/268 (57.84%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL--------------RHAQLPEEARELEKE-----LRQITKEKNEAVRGQ----DFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HHK+  TD A+++AA+LS++YI+DR LPDKAIDLIDEA SR+R+              R  QL  EA+ L+KE     ++++ K + E VR +    D E+       E+   AQI   +++ ++  +A    GD+  +                                VTE +I  +VS WTGIPV K+   E ++LL+ME  LH RVIGQ+EAV A+S A+RR+R GL +PNRP  SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLEKEYADLEEIWTSEKAEVTGSAQIQQKIEQSRQELEAARRRGDLNRMAELQYGIIPDLERSLQMVDQHGKPENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.103e-46
Identity = 106/266 (39.85%), Postives = 152/266 (57.14%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK-----------------------AQISALVDKGK--------------------------EMSKAETEAGDVGPVVTEV----DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ IL+GL+E+YE+HH +R +D A+V+AA LS +YI+DRFLPDKAIDL+DEA SRVR++    PEE  E+++ L Q+  E+    +  D      L + E+++                        AQ    +D+ +                          E   AE EAGD   +  EV     I  +VS WTG+PVEK+   E ++LLKME+ L  RV+GQDEA++A+S A+RRAR GL++P++PI SF+F GPTGVGK++
Sbjct:  346 TVSILRGLKEKYEVHHGVRISDSAIVAAATLSNRYIADRFLPDKAIDLVDEASSRVRMQIDSKPEELDEIDRRLVQLKIEREALSKETDAASKQRLENLEVEIDDLQFRSDEMTARWKAEKEKVGGAAQAREALDRLRADLANAQRAGDFARAGQIQYGEIPALERRLAEAEAGDTQALTPEVVDAEQIAAVVSRWTGVPVEKMLEGEREKLLKMEDELRGRVVGQDEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKTE 611          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.028e-45
Identity = 113/270 (41.85%), Postives = 156/270 (57.78%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV----------RGQDFEKAGELRDRE--------------------MDLKAQIS------ALVDKGKEMSKA---------------------ETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE HHK+R +D ALV+AA LS +YI+DRFLPDKAIDL+DEA SR+R++    PEE  E+++ + Q+  E+ EA+          R Q  EK  EL D E                     DLK Q+       A+  +  E  KA                     E +   +   VT   +  ++S WTGIPV+++   E ++LL+ME+ + KRV+GQ EAV+AIS+A+RRAR GL++PNRPI SFIF GPTGVGK++
Sbjct:  347 TISILRGLKEKYEQHHKVRVSDSALVAAAMLSNRYITDRFLPDKAIDLVDEAASRLRMQVDSKPEELDEIDRRIMQLKIER-EALKVETDAASKDRLQRIEK--ELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.459e-45
Identity = 113/270 (41.85%), Postives = 155/270 (57.41%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV----------RGQDFEKAGELRDRE--------------------MDLKAQIS------ALVDKGKEMSKA---------------------ETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE HHK+R +D ALV+AA LS +YI+DRFLPDKAIDL+DEA SR+R+     PEE  E+++ + Q+  E+ EA+          R Q  EK  EL D E                     DLK Q+       A+  +  E  KA                     E +   +   VT   +  ++S WTGIPV+++   E ++LL+ME+ + KRV+GQ EAV+AIS+A+RRAR GL++PNRPI SFIF GPTGVGK++
Sbjct:  347 TISILRGLKEKYEQHHKVRVSDSALVAAATLSNRYITDRFLPDKAIDLVDEAASRLRMHVDSKPEELDEIDRRIMQLKIER-EALKVETDAASKDRLQRIEK--ELSDLEEESAELTAKWQAEKQKLGLAADLKRQLEEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.459e-45
Identity = 109/269 (40.52%), Postives = 154/269 (57.25%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKA-------GELRDREMDLKAQISA---LVDKGK-----------EMSKAETEAGDVGPV-----------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE HH +R  D+A+++A +LS +YI+DRFLPDKAIDL+DEA +++R+    +PEE  E+ ++++Q+  E+    R  D  K         EL++ E   KA+  +   L+DK +           E  KAE E GD G V                                   V   DI  +VS WTGIPV K+   E D+LL +E+ LH+RVIGQDEA++A++ A+RR+R GL++P RPI SFIF G TGVGK++
Sbjct:  344 TISILRGLKERYENHHHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKPKLEIIGKELAELKEVEKSFKAKWQSEKTLMDKIQQNKVEIENLKFEAEKAERE-GDYGKVAEIRYGKLQALDKEIEDTQEKLRGMQGDKAMIKEEVDAEDIADVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTE 611          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.459e-45
Identity = 111/274 (40.51%), Postives = 149/274 (54.38%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-----------------------------LEKELR-------------------------------QITKEKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH ++  D ALV+AA LS +YISDRFLPDKAIDL+DEA +++++     PEE  E                             LEKEL                                Q+  E  +A R  D+ KA EL+  ++ DL+ Q+ AL  +  E   +      +   V E DI  I+S WTGIP+ K+   E ++LL +E+ LH RVIGQDEAV A++ AI+R+R GL +PNRP ASFIF GPTGVGK++
Sbjct:  348 TISILRGLKERYEVHHGVKIADSALVAAAMLSNRYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEVDRKILQLEMERLSLQRENDSASKERLEKLEKELADFKEEQSKLNGQWQSEKTVIDQIRTVKETIDQVNLEIQQAQRDYDYNKAAELQYGKLTDLQRQVEALETQLAEQQTSGKSL--LREEVLESDIAEIISKWTGIPISKLVESEKEKLLHLEDELHSRVIGQDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTE 619          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.518e-45
Identity = 105/267 (39.33%), Postives = 155/267 (58.05%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQISALVDKGKEMSK----------------------------AETEAGDVGPVVTEV--------------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +R+R+     PEE   LE++  Q+  E+    + +D +    L+  E ++       A++ A  ++ +E+ +                            AE   G++  +  EV                    DI  IVS WTGIPV K+   E ++LL++EE LHKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK++
Sbjct:  337 TISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 603          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.518e-45
Identity = 105/267 (39.33%), Postives = 155/267 (58.05%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQISALVDKGKEMSK----------------------------AETEAGDVGPVVTEV--------------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +R+R+     PEE   LE++  Q+  E+    + +D +    L+  E ++       A++ A  ++ +E+ +                            AE   G++  +  EV                    DI  IVS WTGIPV K+   E ++LL++EE LHKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK++
Sbjct:  337 TISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 603          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_AGRT53.129e-4640.89Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_PORGI4.086e-4640.52Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_PSESM6.970e-4641.04Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_CAUCR9.103e-4639.85Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB_BRUME2.028e-4541.85Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_BRUSU3.459e-4541.85Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BACTN3.459e-4540.52Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB2_SYNY33.459e-4540.51Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_THET84.518e-4539.33Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET24.518e-4539.33Chaperone protein clpB OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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