CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.901e-45
Identity = 110/273 (40.29%), Postives = 163/273 (59.71%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEK------NEAVRGQDFEKA----GELRDREMDLKAQ----------ISALVDK-------------------------------GKEMSKAET------EAGDVGPV---VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +R  D ALV+AA LS +YI+DRFLPDKAIDL+DE+ +R+++     PEE  E+++++ Q+  EK      +++V  +  EK      EL +++  L AQ          +S+L ++                                K++S+ ET      EAGD   +   VTE DI  +++ WTGIPV K+   E ++LL +E  LH+RVIGQ++AV+A++ AI+R+R GL +PNRPIASF+F GPTGVGK++
Sbjct:  347 TISILRGLKERYEVHHGVRIADNALVAAAVLSSRYIADRFLPDKAIDLMDESAARLKMEITSKPEEIDEIDRKIVQLEMEKLSLGRESDSVSKERLEKLERELAELAEQQSALNAQWQQEKGAIDDLSSLKEEIERVQLQVEQAKRSYDLNKAAELEYGTLAGLQKQLSEKETALAQDGEAGDKSLLREEVTEDDIADVIAKWTGIPVAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTE 619          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.706e-45
Identity = 98/213 (46.01%), Postives = 137/213 (64.32%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+G++ RYE +H ++YTDEA+ +AA LS +YI DRFLPDKAIDL+DE+GS+  L    +  E  ++ + +     +KNEA + +DFEKA   RD+           + K +E+   E    ++ PV+TE DI+ IV   T IPV  +   E  +L+ + + L   VIGQDEAV  I++AIRR+RVGL  PNRPI SF+F GPTGVGK++
Sbjct:  291 TITILRGIQARYEDYHHVKYTDEAIEAAAHLSNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPE--DINRRIADAETKKNEATQAEDFEKAAHFRDQ-----------ITKLRELQNHEVSDDEI-PVITEKDIEQIVEQKTHIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTE 489          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.706e-45
Identity = 113/275 (41.09%), Postives = 156/275 (56.73%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG--------------------------------------SRVRLRH-----AQLPEEAREL-----------------EKELRQITKEKNEAVRGQDFEKAGELRDREM-DLKAQISALVDKGKEMSKAETEAGDV-GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +R +D ALV+AA LS++YISDRFLPDKAIDL+DEA                                       SR RL       A L EE R L                 ++E+ Q+  +  +A R  D  +A EL+  ++ +L+ ++ A     K++S+ +T    +    VTE DI  I+S WTGIPV K+   E ++LL +E+ LHKRV+GQ+EAV+ +S AI+R+R GL +PNRPIASFIF GPTGVGK++
Sbjct:  349 TISILRGLKERYEVHHGVRISDSALVAAAVLSHRYISDRFLPDKAIDLMDEAAAKLKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERLEKELADLKEEQRSLNAQWQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDLNRAAELKYGKLSELQKRLDAA---DKQLSETQTSGRSLLREEVTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTE 620          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.315e-44
Identity = 110/270 (40.74%), Postives = 149/270 (55.19%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEK-------------------------NEAVRG---------QDFEKAGELRDR-------------EMDLKAQISALVDKGKEMSKAETEAGD----------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ IL+GLRERYE HHK+R TD ALV+AAQLS++YI+ R LPDKAIDL+DEA SR+R+     PEE   L +++ ++T E+                          E +RG         +   K GEL+ R             + DL      L  +  E++K   EA            V   VT  DI  +VSAWTG+PV K+   ES++LL ME  + KR++GQ  AVKA+S A+RR+R G+ +PNRP  SF+F GPTGVGK++
Sbjct:  347 TVAILRGLRERYEAHHKVRITDSALVAAAQLSHRYITGRQLPDKAIDLVDEAASRLRMEIDSSPEEIDTLRRQVDRLTMEQFAVEKEEDPGSKARLARINSDLADAKEQLRGLEARWAAEKEGLNKVGELKTRIDALRTEADKHTRDGDLAKASEILYGEIPELNKQLDEASAAEEDSQGKSMVSEEVTSDDIAEVVSAWTGVPVGKMLEGESEKLLDMENRIGKRLVGQQAAVKAVSDAVRRSRAGISDPNRPTGSFMFLGPTGVGKTE 616          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.717e-44
Identity = 110/281 (39.15%), Postives = 151/281 (53.74%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-----------------------------LEKELRQITKEKN-------------------------------EAVRGQDFEKAGELRDREM--------DLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +R +D ALV+AA LS +YISDRFLPDKAIDL+DE+ +R+++     PEE  E                             LEKEL  + +E+                                +A R  D  KA EL+  ++        +++  ++     GK + + E         VTEVDI  I+S WTGIPV K+   E  +LL ++E LH+RVIGQ+EAV A++ AI+R+R GL +P RPIASFIF GPTGVGK++
Sbjct:  348 TISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNKAAELKYGKLTELQRKLNEMEGGLATTHTSGKSLLREE---------VTEVDIAEIISKWTGIPVSKLVESEMQKLLNLDEELHQRVIGQEEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTE 619          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.242e-44
Identity = 112/268 (41.79%), Postives = 153/268 (57.09%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT-------KEKNEAVRGQDFEKAGELRDREMDL----------KAQISALVDKGKEMSKAETE------AGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYEIHH +  TD A+V+AA LS++YISDR LPDKAIDLIDEA S +R+     PE    LE+ + Q+        KE++EA R +      EL ++E +           KA +S      +E+  A+TE      AGD+  +                                VT+ +I  ++S  TGIPV K+   E ++LL+ME+ LHKRVIGQ+EAV A++ AIRR+R GL +PNRPI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSIRMEIDSKPEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELAEKEREYAELEEVWKSEKATLSGSQHIKQELDTAKTELEQARRAGDLAKMSELQYGRIPDLEKQLEQAETSEGKEMTLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLLRMEDELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.242e-44
Identity = 108/271 (39.85%), Postives = 151/271 (55.72%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQISALVDKGKE------------------MSKAETEAGDVGPV----------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI I++GL+ER+EIHH +R  D A+V+AA+LS +YI+DR+LPDKAIDLIDEAG+ +R     LP E   +++++ Q+  EK    + +D      L D E +L        +++A  +K KE                  + KAE E  D+  V                                  VTE +I  I+S WTGIPV K+   E D+LL++E+ L  RVIGQDEAV+A+S A+ RAR G+K+P +PI SFIF GPTGVGK++
Sbjct:  350 TISIIRGLKERFEIHHGIRIHDSAIVAAAKLSQRYITDRYLPDKAIDLIDEAGAMIRTEIDSLPTELDSIKRKIFQMEIEKEALAKEKDSRSKERLEDLEKELSNLKEKDKEMTAKYEKEKEQIINMRNLKQKLDEVKGQLEKAEREY-DLNKVAELKYGIIPGIKSQIEEKEILIKENSQGNMLKEEVTENEISKIISHWTGIPVTKLIEGEKDKLLRLEDELKSRVIGQDEAVEAVSNAVLRARAGMKDPQKPIGSFIFLGPTGVGKTE 619          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.928e-44
Identity = 107/268 (39.93%), Postives = 156/268 (58.21%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQD--FEKAGELRDREMDLKA-QISALVDK---------GKEMSKAETE-----------AGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH ++ TD A+V+AA LS++YI+DR LPDKAIDLIDEA S +R++    PEE   L++ + Q+  E+   ++  D   +K  ++ + E+D K  Q S L ++         G +  KAE E            GD+  +                                VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.928e-44
Identity = 107/268 (39.93%), Postives = 156/268 (58.21%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQD--FEKAGELRDREMDLKA-QISALVDK---------GKEMSKAETE-----------AGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH ++ TD A+V+AA LS++YI+DR LPDKAIDLIDEA S +R++    PEE   L++ + Q+  E+   ++  D   +K  ++ + E+D K  Q S L ++         G +  KAE E            GD+  +                                VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.928e-44
Identity = 107/273 (39.19%), Postives = 158/273 (57.88%), Query Frame = 2
Query:   11 IQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT-------KEKNEAVRGQ----------------------DFEKAG------------ELR------DREMDL--------------KAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            I IL+GL+E+YE+HH +R TD ALVSA +LS++YI++RFLPDKAIDLIDEA S++ +    +PEE  ++E+EL Q+        KEK+E+ R +                      +FEK G            +L+      +RE DL              + ++ AL ++ KE +K+ +E   +   V   D+  +V+ WTGIPV K+   ES +LL ME++L  RV+GQD A+  ++ AIRRAR  + +PNRPI +F+F GPTGVGK++
Sbjct:  343 ITILRGLKEKYEVHHGIRITDAALVSAVKLSHRYITNRFLPDKAIDLIDEAASKLGIETRSVPEEVDKIERELMQLRIEKEALKKEKDESARERLAVIDKEITELNAKNQLLREQWEFEKGGIEGIKKLKADIEDLKVAVAKAEREGDLGKAAELKYGKLPEAEKKLKALEERSKEGAKSSSENRMLKEEVGPEDVAEVVAKWTGIPVSKMLESESQKLLHMEDSLKHRVVGQDHALTIVADAIRRARAEISDPNRPIGTFMFLGPTGVGKTE 615          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_PROMM5.901e-4540.29Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPE_LACLA7.706e-4546.01ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_GLOVI7.706e-4541.09Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_PROFR1.315e-4440.74Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB1_SYNE71.717e-4439.15Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_HAEIN2.242e-4441.79Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_CLOTE2.242e-4439.85Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_SALTY2.928e-4439.93Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI2.928e-4439.93Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_BDEBA2.928e-4439.19Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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