CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:256..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 105/270 (38.89%), Postives = 153/270 (56.67%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQD--------------FEKAGELRDREMDLKAQISALVDKGKEMSKAETE-----------AGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH ++ TD A+V+AA LS++YI+DR LPDKAIDLIDEA S +R++    PEE   L++ + Q+  E+   ++  D               +K  +  + E + KA+ ++L   G +  KAE E            GD+  +                                VT+ +I  +++ WTGIPV ++   E ++LL+ME+ LH RVIGQ+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL--SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 110/269 (40.89%), Postives = 151/269 (56.13%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEAVR----------GQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEA------GDVGPV---------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ IL+GL+ERYE+HH +R  D ALV+AA+LS++YI+ RFLPDKAIDL+DEA SR+R+     P+E  ELE+ +R++       TKE + A R            + EK  EL+ R  + KA I  +    +E+    +E+      GD G V                                 VT   I  +VSAWTGIP  K+   E+++LL ME  L KRV+GQ EAV A+S A+RR+R G+ +PNRP  SF+F GPTGVGK++
Sbjct:  348 TVGILRGLKERYEVHHGVRIQDSALVAAAELSHRYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDELERIVRRLEIEEVALTKETDVASRERLERLRSELADEREKLSELKARWQNEKAVIDDVRKFKEELEALRSESDIAEREGDYGRVAELRYGRIPELEKKIAEAEEKIGGADNSMLTEEVTPEVIAEVVSAWTGIPAGKMMQGETEKLLNMERFLGKRVVGQHEAVTAVSDAVRRSRAGVADPNRPTGSFLFLGPTGVGKTE 616          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.113e-43
Identity = 107/279 (38.35%), Postives = 157/279 (56.27%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI---------------------TKEKNEAVR-------GQDFEKAGE-------------LRDREMDLKAQI-----------SALVDKG-----------KEMSKAETEAGD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE+HH ++ TD ALV+AA LS++YI DRFLPDKAIDL+DEA +R+++     P E  ++++ L Q+                     +KE+ E ++       GQ  E +G+             L+++E +L+ Q+           +A +  G           KE    E +      +   VTE DI  IV+ WTGIP+ ++   E  +LL++E  LH+RVIGQ EAV A+S AIRRAR G+K+P+RPI SF+F GPTGVGK++
Sbjct:  350 TISILRGLKEKYEVHHGVKITDSALVAAATLSHRYIQDRFLPDKAIDLVDEAAARLKMEITSKPVELEDIDRRLMQLQMEKLSLEGEEKRPGLGADKSSKERLEKIQQEITELEGQQQELSGQWLSEKQMLEEINTLKEKEQELRLQVEKAERATDWEKAAKIKYGELEVLQHDIEEKESKLLEIQGSGNTLLREQVTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTE 628          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.453e-43
Identity = 112/274 (40.88%), Postives = 154/274 (56.20%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA--------------------------------------GSRVRL----------------RHAQLPEE------ARELEKELRQITKEKNEAVRGQDFEKAGELR-DREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GLRER E+ H ++  D ALVSAA LS++YI+DRFLPDKAIDL+DEA                                       S+ RL                +HAQ   E       +EL +EL Q+  E  EA R  D  +A ELR  R  DL+ +++A   + ++++  + E   +  VVTE +I  IV+AWTGIPV ++   E ++LL+++E L +RVIGQDEAVK ++ AI RAR G+++P RPI SFIF GPTGVGK++
Sbjct:  351 TISILRGLRERLEVFHGVKIQDTALVSAATLSHRYITDRFLPDKAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKESDPASKTRLEELRRELADLRGEADAKHAQWEAERQAIRRVQELRQELEQVRHEAEEAERAYDLNRAAELRYGRLQDLERRLAA---EEEQLAAKQGENRLLREVVTEEEIAEIVAAWTGIPVARLQEGEREKLLRLDEILRERVIGQDEAVKLVTDAIIRARSGIRDPRRPIGSFIFLGPTGVGKTE 621          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.898e-43
Identity = 110/268 (41.04%), Postives = 150/268 (55.97%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT-------KEKNEAVRGQ--DFEKAGELRDREM-DLKA---------QISALVDKGKEMSKAETEAGD------------------------------------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+Y +HH +  TD A+V+AA LS +YI+DR LPDKAIDL+DEA SR+R+     PEE   LE+ L Q+        KEK+EA + +  D E+  E+ DRE  DL+          Q +  + +  E +K + EA                                      V   VT  +I  +VS WTGIPV K+   E D+LL+ME  L +RV+GQDEA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIEQAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.898e-43
Identity = 104/267 (38.95%), Postives = 147/267 (55.06%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKA-----------------QISALVDKGKEMSKAET-----------------EAGDVGPV--------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+G++ERY++HH +  TD ALV+AA LS +YI+DR LPDKAIDLIDE+ +R+R+     PE   +L +   Q+  E+    R +D +    L D E  LK                  +++AL +K +++    T                 E G++  +                    VTE DI  +VS WTGIPV K+   E ++LL +EE LH RVIGQD A+ ++S AIRRAR GL +PNRP+ SF+F GP+GVGK++
Sbjct:  337 TISILRGIKERYQVHHNVEITDPALVAAATLSNRYITDRQLPDKAIDLIDESAARLRMALESSPERIDQLSRRKLQLEIEREALKREKDVDSQNRLLDIENQLKTLTDELNEVRSRWEAERGEVAALREKREKLDAVRTQIEKARRDYDLEEAARLEYGELPALEKDVQDLEKKLKSAEFAHMEVTEEDIAAVVSRWTGIPVSKLMEGEREKLLHLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKTE 603          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.898e-43
Identity = 107/280 (38.21%), Postives = 155/280 (55.36%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKE------------------------------------KNEAVRG------QDFEKAGELRDREMDLKAQI-----------SALVDKGK-EMSKAETEAGDVGPV-------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL++RYEIHH ++ TD ALV+AA LS +YISDR+LPDKAIDL+DEA +++++     P E   LE+ LRQ+  E                                    + +A++       +  E+   L++ E  +K QI           +A +  G+ E  + E EA +   +             VTE DI  IV+ WTGIP++K+   E  +LL++E+ LH+RVIGQ +AV A++ AIRRAR G+K+P RPI SF+F GPTGVGK++
Sbjct:  348 TISILRGLKDRYEIHHNVKITDSALVAAAMLSDRYISDRYLPDKAIDLVDEAAAKLKMEITTKPAELEALERRLRQLEMERLSLKQEESLPLSQAPLQATRDRLQRIEAEIAQLQPRQQAMQARWQAEKELLERINSLKEEEDQVKLQIEQAERDYNLNKAAQLKYGRLETLQRELEATEAQLLELQAAGGTFLRDQVTEADIAEIVAKWTGIPLQKLMASERQKLLQLEQVLHQRVIGQSDAVAAVAAAIRRARAGMKDPARPIGSFLFMGPTGVGKTE 627          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.479e-43
Identity = 106/268 (39.55%), Postives = 149/268 (55.60%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPE--------------EARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVD---------KGKEMSKAETEAGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +  TD A+V+AA LS +YISDR LPDKAIDLIDEA S +R++    PE              E + L+KE  +++K++ E +  +  +K  E    E + K + S+L D         K K +       GD+  +                                V+EV+I  ++S WTGIP+ ++  +E ++LL ME  LH+ VIGQDEAV+ IS AIRR+R GL +P RPI SF+F GPTGVGK++
Sbjct:  348 TIAILRGLKERYELHHNVHITDPAIVAAATLSNRYISDRQLPDKAIDLIDEAASSIRIQIDSKPEDLDRLDRRIIQLKLECQALKKESDELSKKRLEILSMELSQKEQEYSVLESEWKRERSSLFDIQNIKSDLEKAKTILDQSRRIGDLAQMSELQYGRIPELEKKLFNAIQSSNKKMRLLRNYVSEVEIAEVLSKWTGIPISRILANEKNKLLNMETILHQLVIGQDEAVRVISNAIRRSRSGLSDPKRPIGSFMFLGPTGVGKTE 615          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.479e-43
Identity = 100/256 (39.06%), Postives = 152/256 (59.38%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDL--------------KAQISALVDKGKEMSKAETEAGDVGP-----------------------------VVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI+ILKGLR R E  HK++ +DEA+ +A +L+ +Y++ R LPDKAID +D+A +R +L+    P E +E+E++++ + ++  EA    D+EK  +L+  +  L              +A+I+ L  K +E+ +   EA + G                              VVT  D+  +VS WTGIPV ++  +E  +LLK+E+ LHKRV+ Q+ AVKA++ AIRRAR GLK+P RPIASF+F GPTGVGK++
Sbjct:  479 TIEILKGLRPRLEQFHKVKISDEAIEAAVKLTKRYVTFRRLPDKAIDALDQAAARKKLKVIGTPPEIQEIERKIKALEEQIIEANLKGDYEKEAQLKIEKAKLEKEKQELLGKVGGVEAKIAELKKKIEELDEKIKEAAEKGDYEKEAELKIEKAKLEKELKKLEQEKSKELVVTWDDVAEVVSEWTGIPVSRLKEEEMQKLLKLEDELHKRVVDQEHAVKAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTE 734          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.238e-43
Identity = 107/268 (39.93%), Postives = 145/268 (54.10%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDL--------------KAQISALVDKGK-----EMSKAETEAGD------------------------------------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERY +HH +  TD A+V+AA LS +YI+DR LPDKAIDL+DEA SR+R+     PEE   LE+ L Q+  ++    + +D      L D E D+              K++ +AL    K     E +K E EA                                      V   VT  +I  +VS WTGIPV K+   E D+LL+ME+ LH RV+GQ+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDDASRQRLADLETDIDKLEREFYDLNELWKSEKAALQGTTKVKEQIEHAKLELEAAQRRQDYAKMSEIQYGVLPQLEKQMALANEVEHHDFKLVQDRVTAEEIAEVVSRWTGIPVNKMLEGERDKLLRMEDELHHRVVGQNEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTE 613          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_ECO576.524e-4438.89Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_COREF6.524e-4440.89Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB1_SYNY31.113e-4338.35Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB2_STRAW1.453e-4340.88Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_XYLFT1.898e-4341.04Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_DEIRA1.898e-4338.95Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB2_THEEB1.898e-4338.21Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_BLOFL2.479e-4339.55Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPB_AQUAE2.479e-4339.06Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB_XANAC3.238e-4339.93Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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