CX296693

Overview
NameCX296693
Unique NameCX296693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:256..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 108/272 (39.71%), Postives = 153/272 (56.25%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVR-GQD---FEKAGELRD-----------------REMDLKAQISAL----VDKGKEMSKAETEA----------GDVGPVVTEVD------------------------IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YE +H +R  D A+++AA LS +YI+DRFLPDKAIDLIDEA SR+R+    +P E  E+E+ + Q+  EK   +R  QD    E+  +L D                 RE D+  ++S+L     +K +E  KAE E           G++  +  E+                         +  IVS WTGIPV ++   E+D+L+ ME+ L  RV+GQDEA+  ++ AIRRAR GL +PNRPI SF+F GPTGVGK++
Sbjct:  348 TIAILRGLKEKYENYHGIRIKDSAIIAAATLSDRYITDRFLPDKAIDLIDEAASRLRIEIDSMPTEIDEVERRIIQLEIEKQALLRESQDPHSLERLKKLADELEELKAKSAELKGHWQREKDIIGRVSSLRQRLEEKREEAKKAEREGNLARTAEIRYGEIPAIEKEIADRSAELEDIRKEGKMLPEEVDGELVAEIVSRWTGIPVSRMMEGEADKLVHMEDRLITRVVGQDEALVLVANAIRRARSGLSDPNRPIGSFLFLGPTGVGKTE 619          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 112/272 (41.18%), Postives = 151/272 (55.51%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQ-------ITKEKNEA-------VRGQDFEKAGELRD-------------------REMD-LKAQISALVDKGKEMSKAETE----------------AGDVGPV---------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+E+YEIHH +  TD A+V+AA+LS +YI+DRFLPDKAIDLIDEA SR+++     PE   +L++ L Q       + KE +EA       +  +  E + E  D                    E+D LK  +  L  KG     AE +                AGD G           V   +I  +VS  TGIPV K+ T E ++LLKME+ LH+RV+GQDEAV A++ AIRR+R GL +PN+P  SF+F GPTGVGK++
Sbjct:  346 TIAILRGLQEKYEIHHGVDITDPAIVAAAELSQRYITDRFLPDKAIDLIDEAASRIKMELDSKPEAMDKLDRRLIQLKIEREAVNKESDEASQKRLKLIEDEIAELSREYADLEEIWKAEKAAQQGSQSIKEEIDRLKVDMEELKRKGDWQKLAELQYGKLPQLEARLKEAESAGDKGEAKPNRLLRTQVGAEEIAEVVSRATGIPVSKMLTGEREKLLKMEDVLHQRVVGQDEAVSAVADAIRRSRSGLADPNKPYGSFLFLGPTGVGKTE 617          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 115/270 (42.59%), Postives = 155/270 (57.41%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT-------KEKNEAVRGQ----DFE---KAGELRDREMDLKAQISALV----------------------DKGKEMS------------------KAETEAGD---VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYEIHH ++ TD A+V+AA LS++YISDR LPDKAIDLIDEA S +R+     PE   +LE+ + Q+        KEK+EA R +    D E   KA E    E   KA+ SAL+                      D  ++MS                  K E E  D   +   VTE +I  ++S  TGIP+ K+   E ++LL+ME+ LH RVIGQ+EAV+A++ AI R+R GL +PN+PI SF+F GPTGVGK++
Sbjct:  344 TIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEKDEASRQRLAKLDEEMTAKAQEYSALEEVWKAEKSALLGTQHLKTELENARIAMDQAKRADNFEKMSELQYGTIPALEKQLQDAIKREEENNDHHLLRTKVTEEEIAEVLSKATGIPITKMMEGEKEKLLRMEQVLHSRVIGQNEAVEAVANAILRSRAGLADPNKPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.580e-42
Identity = 106/268 (39.55%), Postives = 150/268 (55.97%), Query Frame = 2
Query:   11 IQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI--------------TKEKNEAVRGQ---DFEKAGELRDREMDLKAQISALVDKGKEMSKAETEA------GDVGPV---------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            I IL+GL+ERYE+HH +R  D ALV+AA+LS +YI+ RFLPDKAIDL+DEA SR+R+     P+E  ELE+ +R++              +KE+ E +R +   + EK  EL+ R  + K  I  + +  +E+    +E+      G+ G V                                 VT   I  +VSAWTGIP  K+   E+++LL ME  L  RV+GQ EAV A+S A+RR+R G+ +PNRP  SF+F GPTGVGK++
Sbjct:  349 IGILRGLKERYEVHHGVRIQDSALVAAAELSNRYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDELERIVRRLEIEEMALSKESDAASKERLEKLRSELADEREKLSELKARWQNEKTAIDDVREMKEELEALRSESDIAERDGNYGRVAELRYGRIPELEKQIEDAESKVEVNENAMLTEEVTPDTIADVVSAWTGIPAGKMMQGETEKLLNMERVLGNRVVGQLEAVTAVSDAVRRSRAGVADPNRPTGSFLFLGPTGVGKTE 616          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.580e-42
Identity = 108/270 (40.00%), Postives = 149/270 (55.19%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKE-------------------------LRQITKEKNEAVRG---------QDFEKAGELRDREMDLKAQ--------------------ISALVDKGKEMSKAETEAGDVGPVVTEV---DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ RYE HHK++  D ALV+AA LS +YI+ RFLPDKAIDL+DEA SR+R+     P E  EL+++                         LR+   +K E +RG         Q   + GEL+++  +L+ Q                    I AL    +E S+AE EA     V  EV   DI  +V +WTGIP  ++   E+ +LL+MEE L  R+IGQ EAV+A+S A+RR R G+ +P+RP  SF+F GPTGVGK++
Sbjct:  348 TIAILRGLKGRYEAHHKVQIADSALVAAAALSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRQVDRLKMEELAIGKETDAASRERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEKLDELRGQAERAQRDGDFDTASKLLYGEIPALERDLEEASEAEEEAARDTMVKEEVGPDDIADVVGSWTGIPAGRLLEGETQKLLRMEEELGHRLIGQSEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTE 617          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42
Identity = 107/273 (39.19%), Postives = 147/273 (53.85%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI--------------TKEKNEAVRGQDFEKAGELRDREMDLKAQISA-------LVDKGKEMSKAETEAGD---------------------------------------VGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ER+EIHH +   D ALV+AA LS +YI+DRFLPDKAIDLIDEA + +R+    LP E  +  + L Q+              +K++ E +RG+      ELR+    LKAQ  A       + +K  E+  A  E  +                                       V   VTE  I  +V   TGIP+ K+   E ++LL + ETLH+RV+GQDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK++
Sbjct:  348 TISILRGLKERFEIHHGVTIHDNALVAAATLSNRYITDRFLPDKAIDLIDEASATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLEIIRGE----IAELREENNQLKAQWEAEKKEVGNISEKRNELEHARHELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKSDDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGEREKLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTE 616          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 104/265 (39.25%), Postives = 153/265 (57.74%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT------KEKNEAVRGQDFEKAGE----LRDREMDL-------KAQISALVDKGKEMSKAETE------AGDVGPV-----------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +R TD A+++AA LS +YI+DRFLPDKAIDLIDEA SRVR+     PE   ELE+++ Q+       K++++    Q  +K  E    L  +  DL       K +I+ + +  +++  A  E      +G++G                               VT  DI +IVS WTGIPV+ +   E ++LL ME  + +RVIGQ +A++AIS A+RR+R G+++ N+P  SF+F GPTGVGK++
Sbjct:  348 TISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAASRVRIEMDSKPEVIDELERKVIQLKIEAEALKKESDENSKQRLKKINEEIENLNSKFADLNSKWQMEKNKIARIQETAEKLDNARKELELVQRSGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTGDDIANIVSKWTGIPVDNMMHSEKEKLLNMENEIGRRVIGQKDAIEAISNAVRRSRSGVQDTNKPFGSFLFLGPTGVGKTE 612          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 105/270 (38.89%), Postives = 149/270 (55.19%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELE----------------------KELRQITKEKNEAVRGQDFEKAGELRDRE---MDLKAQISALVDKGKEMSKAETEAGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +  TD A+V+AA LS++Y+SDR LPDKAIDLIDEA S +R++    PE   +LE                      K LR + +E NE  R  +F +  E+ + E   +     I A +++ +   +    AGD+  +                                VT+ +I  ++S  TGIPV K+   E ++LL+MEE LHKRVIGQ EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKER--EFAELEEIWNAEKAALSGTQHIKAALEQARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 105/270 (38.89%), Postives = 149/270 (55.19%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELE----------------------KELRQITKEKNEAVRGQDFEKAGELRDRE---MDLKAQISALVDKGKEMSKAETEAGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            TI IL+GL+ERYE+HH +  TD A+V+AA LS++Y+SDR LPDKAIDLIDEA S +R++    PE   +LE                      K LR + +E NE  R  +F +  E+ + E   +     I A +++ +   +    AGD+  +                                VT+ +I  ++S  TGIPV K+   E ++LL+MEE LHKRVIGQ EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK++
Sbjct:  346 TIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASSIRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKER--EFAELEEIWNAEKAALSGTQHIKAALEQARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTE 613          
BLAST of CX296693 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 105/268 (39.18%), Postives = 149/268 (55.60%), Query Frame = 2
Query:    8 TIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI-------TKEKNEAVRGQDFEKAGELRDREMDL----------KAQISALVDKGKEMSKAETE------AGDVGPV--------------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSD 646
            T+ IL+GL+ERYE+HH +  TD A+V+AA LS++YISDR LPDKAIDLIDEA S +RL+    PE   +LE+++ Q+       + E +EA   +      EL ++E +           KA +S       E+ +A  +      AGD+  +                                VT+ +I  ++S  TGIPV K+   E ++LL+ME+ LH RV+GQ EAV  +S AIRR+R GL +PNRPI SF+F GPTGVGK++
Sbjct:  346 TVAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRLQIDSKPESLDKLERKIIQLKIEQQALSNEHDEASEKRLQALNDELNEKEREYAELEEVWNTEKAALSGTQHIKSELEQARMDMEFARRAGDLNRMSELQYGRIPELEKQLDLATQAEMQEMTLLRNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHNRVVGQSEAVAVVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 613          
The following BLAST results are available for this feature:
BLAST of CX296693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_GEOSL1.607e-4239.71Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_CHRVO1.607e-4241.18Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_HAEDU2.099e-4242.59Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_CORGL3.580e-4239.55Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB1_STRAW3.580e-4240.00Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_LACLM4.675e-4239.19Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_WOLPM6.106e-4239.25Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_VIBVY6.106e-4238.89Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU6.106e-4238.89Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_VIBPA6.106e-4239.18Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]

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Properties
Property NameValue
Genbank descriptionC05801G05SK FerrChloL1 Citrus clementina cDNA clone C05801G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296693 ID=CX296693; Name=CX296693; organism=Citrus clementina; type=EST; length=648bp
TGGATGAACCATACAAATTTTGAAAGGGCTTCGAGAGCGATATGAAATTC
ACCACAAGCTTCGTTACACTGATGAAGCACTAGTTTCTGCTGCTCAGTTG
TCATACCAGTACATCAGTGACCGTTTTCTCCCTGATAAAGCTATTGATTT
GATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCATGCACAGCTCCCCG
AGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGATAACTAAGGAGAAG
AATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCTGGAGAGTTACGTGA
TAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCTTGTCGATAAAGGCA
AAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATGTTGGTCCTGTTGTG
ACTGAAGTGGACATTCAACACATTGTCTCAGCTTGGACGGGCATTCCGGT
TGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGA
CCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTGTCAAAGCTATTAGT
CGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAACCCCAATCGACCAAT
TGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGGGAAGTCTGACTG
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