CX296694

Overview
NameCX296694
Unique NameCX296694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_NITMS (Chaperone protein dnaK OS=Nitrosopumilus maritimus (strain SCM1) GN=dnaK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 40/118 (33.90%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            T ++ KITI   K +LS++EIEK+ ++AEK+  ED++ K+K++ KN  E+Y Y     V  + +  K+      KI DA+ +  + LD     E +E + K++ L+SI N +  ++Y+
Sbjct:  471 TQKEAKITIET-KTKLSEEEIEKLKEDAEKFSEEDKKKKEKIDLKNEAESYIYTTEKLVNHD-LKDKISQEQGIKITDAVKEVKEVLDK----EPEELKPKLEALQSIVNEVTTELYK 582          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: HSP75_SCHPO (Heat shock protein sks2 OS=Schizosaccharomyces pombe GN=sks2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  390 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLD 653
            TG+   I ITN  G LS  +I++M++ A+K+K +D++  KK+EAK+ LE+Y  N+   + +  +  KL   DK KIE  + + +  L+
Sbjct:  498 TGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKLKRGDKSKIEAQLAECMSQLE 585          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_WOLSU (Chaperone protein dnaK OS=Wolinella succinogenes GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG+  +I IT   G LS  EIEKMV++AE +K ED + K  +EAKN  ++  Y     + + K   +L+ +++ KIE AI+   + L    L + +E ++K+K L  + + +   MY+
Sbjct:  487 TGKSQEIKITGSSG-LSDSEIEKMVKDAELHKEEDSKRKSMIEAKNQADSLLYQTEKSLGEFK--DQLEESERTKIESAINDLKETLKKENLTK-EEIDEKVKALTEVSHKLAEAMYK 600          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSM (Chaperone protein dnaK OS=Geobacter sp. (strain M21) GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 36/100 (36.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  363 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIED---AIDQAIQWLDSNQLAEADE 653
            TG++  I IT   G LSK+E+EKMV+EAE + A+D++ ++ +EAKN  +N  Y     + +   G K+D ++K+KIE+   A+ +A++  D++++ +A +
Sbjct:  488 TGKEQSIRITASSG-LSKEEVEKMVREAEAHAADDKKKRELIEAKNQADNLIYQTEKSLTE--FGDKIDASEKQKIEEGVAALKKALEGSDADEIKKASD 584          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_GEOBB (Chaperone protein dnaK OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 36/100 (36.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  363 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIED---AIDQAIQWLDSNQLAEADE 653
            TG++  I IT   G LSK+E+EKMV+EAE + A+D++ ++ +EAKN  +N  Y     + +   G K+D ++K+KIE+   A+ +A++  D++++ +A +
Sbjct:  488 TGKEQSIRITASSG-LSKEEVEKMVREAEAHAADDKKKRELIEAKNQADNLIYQTEKSLTE--FGDKIDASEKQKIEEGVAALKKALEGSDADEIKKASD 584          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_WOLPM (Chaperone protein dnaK OS=Wolbachia pipientis wMel GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG++ KI I +  G LS +EI +MV+EAE+   EDE+ KK +E KN  ++  ++    + +   G K+ P D+  IE+A+++  +   S+ + +AD  + K+  L  +   +   MYQ
Sbjct:  487 TGKEQKIRIQSSGG-LSDNEINRMVKEAEEKAQEDEKRKKFIEVKNQADSLVHSTEKSLTE--YGDKVSPEDRSAIENAVNELKEVSKSDNIDDADSIQQKVTNLSQLSMKLGEAMYQ 601          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_DEHE1 (Chaperone protein dnaK OS=Dehalococcoides ethenogenes (strain 195) GN=dnaK PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  303 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKD--EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 653
            TG++ KITIT   G LSK+E+EKM +EAE + AED + K+++EA+N  +N AYN    ++D  +KI ++L+   + KI  A+  A+Q  D       D  +   +EL +    + + +Y
Sbjct:  493 TGREQKITITASSG-LSKEEVEKMTREAEAHAAEDSKRKEEIEARNVADNLAYNAEKTLRDNKDKIPAELNTELESKIA-AVRTALQGTD------VDAIKTTTQELSTALQSVGSAVY 603          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_LACH4 (Chaperone protein dnaK OS=Lactobacillus helveticus (strain DPC 4571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG++ KITI +  G LS +EI++M ++AE++  ED++ K++V+ +N ++   +     +KD K   KL  +D+K +EDA++   +    N L   DE ++K   L      +  K+YQ
Sbjct:  463 TGKEQKITIKSSSG-LSDEEIKRMQKDAEEHAEEDKKRKEEVDLRNEVDQLIFTTDKTLKDTK--DKLSDSDRKPVEDALEALKKAQKDNNL---DEMKEKKDALSKAAQDLAVKLYQ 574          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_WOLTR (Chaperone protein dnaK OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 37/118 (31.36%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG++ KI I +  G LS+ EI +M++EAE+   EDE+ KK VE KN  ++  ++    +K+   G K+ P DK  IE+A+++  +   S+ + + D  + K+  L  +   +   +Y+
Sbjct:  483 TGKEQKIRIQSSGG-LSESEINRMIREAEEKAQEDEKRKKFVEVKNQADSLVHSTEKSLKE--YGDKVSPEDKSAIENAVNELKEASKSDNIDDVDSIQQKITNLSQLSMKLGETIYK 597          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBL (Chaperone protein dnaK OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = -2
Query:  303 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 653
            TG++ KI I +  G LS+DEI+KMV++AE + A D+  ++ +EAKN L+  AY++   V +   G K+  ++K+   D + +A + ++SN  A     E     +  I + I  K+Y
Sbjct:  489 TGKEQKIRIESSSG-LSEDEIQKMVKDAEAHAAADKAQREVIEAKNELDTLAYSLEKTVNE--AGDKIGASEKQLATDEVKRAREAIESNDKA---RMESAKASISKIASDIATKVY 599          
The following BLAST results are available for this feature:
BLAST of CX296694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DNAK_NITMS1.495e-1133.90Chaperone protein dnaK OS=Nitrosopumilus maritimus... [more]
HSP75_SCHPO3.331e-1136.36Heat shock protein sks2 OS=Schizosaccharomyces pom... [more]
DNAK_WOLSU3.331e-1133.90Chaperone protein dnaK OS=Wolinella succinogenes G... [more]
DNAK_GEOSM3.331e-1136.00Chaperone protein dnaK OS=Geobacter sp. (strain M2... [more]
DNAK_GEOBB3.331e-1136.00Chaperone protein dnaK OS=Geobacter bemidjiensis (... [more]
DNAK_WOLPM4.351e-1132.20Chaperone protein dnaK OS=Wolbachia pipientis wMel... [more]
DNAK_DEHE14.351e-1136.13Chaperone protein dnaK OS=Dehalococcoides ethenoge... [more]
DNAK_LACH45.682e-1132.20Chaperone protein dnaK OS=Lactobacillus helveticus... [more]
DNAK_WOLTR7.422e-1131.36Chaperone protein dnaK OS=Wolbachia sp. subsp. Bru... [more]
DNAK_LEPBL7.422e-1133.33Chaperone protein dnaK OS=Leptospira borgpeterseni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801G06SK FerrChloL1 Citrus clementina cDNA clone C05801G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296694 ID=CX296694; Name=CX296694; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTTTTTTAGGGACCGAAAAATATTCATTATATAAATT
GGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAAGGAAAAATTA
ATATTCCTCCTAAGGCTAAAACAACATAAGATAAAAACCAAACGTCCAGT
TTTCCCACCGTCAAAAAACCGACCTCCCACAAACACAACAAAATAAAACT
GGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGGGGCACTGCCACCAG
CTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACCACCAGCACCT
TGATACATCTTGGCAATGATGGGATTGCAAATGCTCTCAAGCTCCTTCAT
CTTGTCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTATCAAGCCATT
GAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTCAGCTGGATCA
AGTTTGGAGCCGATCTTCTCGTCCTTGACAGGGTTCCTCATATTGTAGGC
ATAGTTTTCCAAGGGATTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCGT
CTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTCAATTTCATCC
TTTGACAATCTACCCTTATCGTTGGTGATTGTGATCTTGTTCTTTTGGCC
CGTT
back to top