CX296694

Overview
NameCX296694
Unique NameCX296694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBJ (Chaperone protein dnaK OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = -2
Query:  303 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 653
            TG++ KI I +  G LS+DEI+KMV++AE + A D+  ++ +EAKN L+  AY++   V +   G K+  ++K+   D + +A + ++SN  A     E     +  I + I  K+Y
Sbjct:  489 TGKEQKIRIESSSG-LSEDEIQKMVKDAEAHAAADKAQREVIEAKNELDTLAYSLEKTVNE--AGDKIGASEKQLATDEVKRAREAIESNDKA---RMESAKASISKIASDIATKVY 599          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_HALHL (Chaperone protein dnaK OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG++  I I    G L++DEIE+MV+EAE+   ED   ++ VEA+N  EN  ++ R  + D  +G ++  A+K++IE AI +  Q  D     + D  E K +EL +    +  K YQ
Sbjct:  493 TGKETGIEIKASSG-LTEDEIERMVKEAEENAEEDRRQRELVEARNQAENMIHSTRKSLSD--LGEQVGDAEKQEIESAISELEQVKDGE---DKDAIEQKTQELATKAGELAQKAYQ 604          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_DEHSB (Chaperone protein dnaK OS=Dehalococcoides sp. (strain BAV1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 42/120 (35.00%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKD--EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            TG++ KITIT   G LSK+E+EKM +EAE + AED + K+++EA+N  +N AYN    ++D  +KI ++L+   + KI  A+  A+Q  D   + +    ++    L+S+ + +  K  +
Sbjct:  493 TGREQKITITASSG-LSKEEVEKMTREAEAHAAEDTKRKEEIEARNVADNLAYNAEKTLRDNKDKIPAELNTELESKIA-AVRTALQGNDVEAIKKTT--QELSTALQSVGSAVYGKQQE 608          
BLAST of CX296694 vs. ExPASy Swiss-Prot
Match: DNAK_CENSY (Chaperone protein dnaK OS=Cenarchaeum symbiosum GN=dnaK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = -2
Query:  300 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNPLENYAYNMRNPVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 653
            T ++ KITI +   +LSKDEIEK+ ++AEK+  EDE+ K KVE KN  E++ Y     +  + +  K+      KI D I +  + LD     + D    K+  L+++ N I  +MYQ
Sbjct:  470 TQKEAKITIESSS-KLSKDEIEKLREDAEKFSDEDEKKKGKVELKNEAESFVYTAEKLINHD-LKDKITQEQGIKISDGIREVKEALDQ----DPDILRPKLDSLKAMVNEITTEMYQ 581          
The following BLAST results are available for this feature:
BLAST of CX296694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
DNAK_LEPBJ7.422e-1133.33Chaperone protein dnaK OS=Leptospira borgpeterseni... [more]
DNAK_HALHL7.422e-1135.59Chaperone protein dnaK OS=Halorhodospira halophila... [more]
DNAK_DEHSB7.422e-1135.00Chaperone protein dnaK OS=Dehalococcoides sp. (str... [more]
DNAK_CENSY9.693e-1135.59Chaperone protein dnaK OS=Cenarchaeum symbiosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05801G06SK FerrChloL1 Citrus clementina cDNA clone C05801G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296694 ID=CX296694; Name=CX296694; organism=Citrus clementina; type=EST; length=654bp
TTTTTTTTTTTTTTTTTTTTAGGGACCGAAAAATATTCATTATATAAATT
GGTCCGAATTAAAAGTAAAATTTGAAAAATAAAAAGAAAAGGAAAAATTA
ATATTCCTCCTAAGGCTAAAACAACATAAGATAAAAACCAAACGTCCAGT
TTTCCCACCGTCAAAAAACCGACCTCCCACAAACACAACAAAATAAAACT
GGAAGCTTAGTCAACTTCCTCAATCTTGGGACCGGGGGCACTGCCACCAG
CTGGAGGAGCATCATCATCCATGCCACCGCCCATATCACCACCAGCACCT
TGATACATCTTGGCAATGATGGGATTGCAAATGCTCTCAAGCTCCTTCAT
CTTGTCTTCAAATTCATCGGCCTCAGCCAGCTGGTTGCTATCAAGCCATT
GAATTGCCTGATCAATGGCATCCTCAATCTTCTTCTTGTCAGCTGGATCA
AGTTTGGAGCCGATCTTCTCGTCCTTGACAGGGTTCCTCATATTGTAGGC
ATAGTTTTCCAAGGGATTCTTGGCCTCGACCTTCTTCTTGTGCTCCTCGT
CTTCAGCCTTGTACTTCTCGGCCTCTTGAACCATCTTCTCAATTTCATCC
TTTGACAATCTACCCTTATCGTTGGTGATTGTGATCTTGTTCTTTTGGCC
CGTT
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