CX296698

Overview
NameCX296698
Unique NameCX296698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:840..1323. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 8.104e-54
Identity = 98/113 (86.73%), Postives = 105/113 (92.92%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  153 HAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 8.104e-54
Identity = 100/113 (88.50%), Postives = 104/113 (92.04%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  154 HAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.382e-53
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  153 HAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.080e-53
Identity = 102/114 (89.47%), Postives = 105/114 (92.11%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   11 HAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.861e-53
Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  153 HAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 8.960e-53
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  151 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 8.960e-53
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = -2
Query:  109 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 447
            HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  151 HAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.877e-45
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = -2
Query:  115 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 447
            HAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  144 HAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.613e-44
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = -2
Query:  115 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 447
            HAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  162 HAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CX296698 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.457e-44
Identity = 91/112 (81.25%), Postives = 97/112 (86.61%), Query Frame = -2
Query:  112 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 447
            HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  157 HAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
The following BLAST results are available for this feature:
BLAST of CX296698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB23_TOBAC8.104e-5486.73Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH8.104e-5488.50Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP1.382e-5387.61Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_RAPSA3.080e-5389.47Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB215_PEA6.861e-5384.96Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ8.960e-5385.84Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI8.960e-5385.84Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO6.877e-4578.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA2.613e-4476.58Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO4.457e-4481.25Chlorophyll a-b binding protein AB10, chloroplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05801G10SK FerrChloL1 Citrus clementina cDNA clone C05801G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296698 ID=CX296698; Name=CX296698; organism=Citrus clementina; type=EST; length=484bp
CATTTTATAAATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAAC
AGATTTACATGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACC
GAAGCTCACTTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTT
ATTGACAGGGTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGC
CGGTGACAATGGCCTGAACAAAGAAACCAAACATGGAGAACATAGCCAAC
CTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTC
ATCAGCCAAACCCAATGGATCAAAGCTGCCACCTGGGTACAATGGGTCGG
TCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACAGCTCCC
ATCAAGACCACCTGGCAAGCCCAGATGGCCAAGATGCTCTGGGCGTGCCT
CGTGCCGAATTCGGCACGAGGGGGGGGGCCCGGT
back to top